hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbf/mbf02832/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0720 ( 498 res) mbf02832 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PH Pleckstrin homology domain. 55.1 9e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/1 80 181 .. 1 82 [] 55.1 9e-12 Alignments of top-scoring domains: PH: domain 1 of 1, from 80 to 181: score 55.1, E = 9e-12 *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk.......kpkgsi +++eG L++k++k+s +++y++Lf++ Ll +k ++ ++++ ++++ mKIAA0720 80 LLLEGSLRMKEgKdSKMDVYCFLFTDLLLVTKAVkkaertkVIRPPL 126 pLsgcsvre.p...cFeivt.dr......tlllqAeseeereeWvealqs ++++ +re ++++F +++ ++ ++ + +++qA+s+ +++Wv+ + + mKIAA0720 127 LVDKIVCRElRdpgSFLLIYlNEfhsavgAYTFQASSQALCRSWVDTIYN 176 aiaka<-* a++++ mKIAA0720 177 AQNQL 181 //