hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09205/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0719  ( 626 res)   mbg09205

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                      145.4    5.9e-39  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/10    132   165 ..     1    34 []    40.2  2.8e-07
TPR        2/10    171   204 ..     1    34 []    26.1    0.005
TPR        3/10    205   238 ..     1    34 []    11.1       27
TPR        4/10    347   380 ..     1    34 []    12.3       20
TPR        5/10    385   418 ..     1    34 []    15.2      9.2
TPR        6/10    419   452 ..     1    34 []    18.7     0.85
TPR        7/10    460   493 ..     1    34 []     5.2  1.3e+02
TPR        8/10    494   527 ..     1    34 []    17.1      2.5
TPR        9/10    528   562 ..     1    34 []     4.3  1.6e+02
TPR       10/10    563   596 ..     1    34 []    15.0      9.9

Alignments of top-scoring domains:
TPR: domain 1 of 10, from 132 to 165: score 40.2, E = 2.8e-07
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+a +n+Gn y+k g+y++Ai++y++A++l P+    
   mKIAA0719   132    AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTE    165  

TPR: domain 2 of 10, from 171 to 204: score 26.1, E = 0.005
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +  + n++ a+++l +++e  ++++kA+el+P++   
   mKIAA0719   171    STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKY    204  

TPR: domain 3 of 10, from 205 to 238: score 11.1, E = 27
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++al++++ a++kl + +e++e+ + +  l+      
   mKIAA0719   205    VKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQ    238  

TPR: domain 4 of 10, from 347 to 380: score 12.3, E = 20
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      aeal+ ++  yl+ g  + A  +++k+++l + n   
   mKIAA0719   347    AEALLLRATFYLLIGSANAAKPDLDKVISLKEAN    380  

TPR: domain 5 of 10, from 385 to 418: score 15.2, E = 9.2
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a al  +G +++++ +     ++++ A e+dP n   
   mKIAA0719   385    ANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMN    418  

TPR: domain 6 of 10, from 419 to 452: score 18.7, E = 0.85
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++++  +G++  +l   +eA+++++ +++l P++   
   mKIAA0719   419    SDVYHHRGQLKILLDLVEEAVADFDACIRLRPKF    452  

TPR: domain 7 of 10, from 460 to 493: score 5.2, E = 1.3e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        aly+++    +  + + A++ +e+ ++  P +   
   mKIAA0719   460    CFALYRQAYTANNSSQVQAAMKGFEEIIKKFPRC    493  

TPR: domain 8 of 10, from 494 to 527: score 17.1, E = 2.5
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ae +   ++a+  + ++ +A e y+k+++l+P+n   
   mKIAA0719   494    AEGYALYAQALTDQQQFGKADEMYDKCIDLEPDN    527  

TPR: domain 9 of 10, from 528 to 562: score 4.3, E = 1.6e+02
                   *->aealynlGnaylklg.dydeAieyyekALeldPnn<-*
                      a ++  +G++ l+ ++d+d+ +e  +kA+e+d ++   
   mKIAA0719   528    ATTYVHKGLLQLQWKqDLDKGLELISKAIEIDNKC    562  

TPR: domain 10 of 10, from 563 to 596: score 15.0, E = 9.9
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        a+  +G +  ++g+ ++Ai+ ++kA+ l+ +    
   mKIAA0719   563    DFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSE    596  

	[output cut off at A = 10 top alignments]
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