hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg09205/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0719 ( 626 res) mbg09205 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TPR_1 Tetratricopeptide repeat 157.5 2.3e-43 10 TPR_2 Tetratricopeptide repeat 133.2 4.7e-36 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TPR_1 1/10 132 165 .. 1 34 [] 43.9 3.5e-09 TPR_2 1/10 132 165 .. 1 34 [] 34.6 2.3e-06 TPR_2 2/10 171 204 .. 1 34 [] 20.3 0.047 TPR_1 2/10 171 204 .. 1 34 [] 28.7 0.00013 TPR_1 3/10 205 238 .. 1 34 [] 8.0 4 TPR_2 3/10 205 238 .. 1 34 [] 9.5 17 TPR_2 4/10 347 380 .. 1 34 [] 8.7 21 TPR_1 4/10 347 380 .. 1 34 [] 12.7 1.1 TPR_1 5/10 385 418 .. 1 34 [] 18.5 0.16 TPR_2 5/10 385 418 .. 1 34 [] 7.8 26 TPR_1 6/10 419 452 .. 1 34 [] 20.4 0.041 TPR_2 6/10 419 452 .. 1 34 [] 16.3 0.73 TPR_1 7/10 460 493 .. 1 34 [] 2.8 17 TPR_2 7/10 460 493 .. 1 34 [] 6.2 41 TPR_1 8/10 494 527 .. 1 34 [] 18.6 0.15 TPR_2 8/10 494 527 .. 1 34 [] 25.1 0.0017 TPR_1 9/10 528 562 .. 1 34 [] 4.2 11 TPR_2 9/10 528 562 .. 1 34 [] 1.1 1.6e+02 TPR_1 10/10 563 596 .. 1 34 [] 16.6 0.38 TPR_2 10/10 563 596 .. 1 34 [] 15.6 1.2 Alignments of top-scoring domains: TPR_1: domain 1 of 10, from 132 to 165: score 43.9, E = 3.5e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a +n+Gn y+k gky++Ai++y++A++l P+ mKIAA0719 132 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTE 165 TPR_2: domain 1 of 10, from 132 to 165: score 34.6, E = 2.3e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a a n G+ y+k+g+ye+A+++y +A++l P+ mKIAA0719 132 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTE 165 TPR_2: domain 2 of 10, from 171 to 204: score 20.3, E = 0.047 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++ n++ a ++l++++e ++++ kA+el+P++ mKIAA0719 171 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKY 204 TPR_1: domain 2 of 10, from 171 to 204: score 28.7, E = 0.00013 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + y n+++a+++l+k++e ++++kA+el+P++ mKIAA0719 171 STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKY 204 TPR_1: domain 3 of 10, from 205 to 238: score 8.0, E = 4 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++a+++++ a++kl + +e +e+ + + l+ mKIAA0719 205 VKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQ 238 TPR_2: domain 3 of 10, from 205 to 238: score 9.5, E = 17 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++al+++++a++kl + +e le+ ++ l+ mKIAA0719 205 VKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQ 238 TPR_2: domain 4 of 10, from 347 to 380: score 8.7, E = 21 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* aeal +++ y+ g A+ +++k+++l + n mKIAA0719 347 AEALLLRATFYLLIGSANAAKPDLDKVISLKEAN 380 TPR_1: domain 4 of 10, from 347 to 380: score 12.7, E = 1.1 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* aea+ ++ yl g ++A +++k+++l + n mKIAA0719 347 AEALLLRATFYLLIGSANAAKPDLDKVISLKEAN 380 TPR_1: domain 5 of 10, from 385 to 418: score 18.5, E = 0.16 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a+ +G +++++++ ++++ A e+dP n mKIAA0719 385 ANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMN 418 TPR_2: domain 5 of 10, from 385 to 418: score 7.8, E = 26 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a al +G +++++++ ++++ A e+dP n mKIAA0719 385 ANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMN 418 TPR_1: domain 6 of 10, from 419 to 452: score 20.4, E = 0.041 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +++y +G++ l +eA+++++ +++l+P++ mKIAA0719 419 SDVYHHRGQLKILLDLVEEAVADFDACIRLRPKF 452 TPR_2: domain 6 of 10, from 419 to 452: score 16.3, E = 0.73 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++++ +G++ + l eeA+++++++++l P+ mKIAA0719 419 SDVYHHRGQLKILLDLVEEAVADFDACIRLRPKF 452 TPR_1: domain 7 of 10, from 460 to 493: score 2.8, E = 17 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+y+ +++ + + ++A + +e+ ++ P + mKIAA0719 460 CFALYRQAYTANNSSQVQAAMKGFEEIIKKFPRC 493 TPR_2: domain 7 of 10, from 460 to 493: score 6.2, E = 41 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* aly+++ + + + + A + +e+ ++ +P++ mKIAA0719 460 CFALYRQAYTANNSSQVQAAMKGFEEIIKKFPRC 493 TPR_1: domain 8 of 10, from 494 to 527: score 18.6, E = 0.15 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae y ++a+ ++++ +A e y+k+++l+P+n mKIAA0719 494 AEGYALYAQALTDQQQFGKADEMYDKCIDLEPDN 527 TPR_2: domain 8 of 10, from 494 to 527: score 25.1, E = 0.0017 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ae++ + ++a+ ++++ +A e y+k+++l+P+n mKIAA0719 494 AEGYALYAQALTDQQQFGKADEMYDKCIDLEPDN 527 TPR_1: domain 9 of 10, from 528 to 562: score 4.2, E = 11 *->aeayynlGnaylklg.kydeAieayekALeldPnn<-* a +y +G+++l+ ++++d+ +e kA+e+d ++ mKIAA0719 528 ATTYVHKGLLQLQWKqDLDKGLELISKAIEIDNKC 562 TPR_2: domain 9 of 10, from 528 to 562: score 1.1, E = 1.6e+02 *->aealynlGlayyk.lgdyeeAleayekAleldPnn<-* a + Gl+ ++ ++d+++ le+ kA+e+d ++ mKIAA0719 528 ATTYVHKGLLQLQwKQDLDKGLELISKAIEIDNKC 562 TPR_1: domain 10 of 10, from 563 to 596: score 16.6, E = 0.38 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ay +G + ++g+ ++Ai+ ++kA+ l + mKIAA0719 563 DFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSE 596 TPR_2: domain 10 of 10, from 563 to 596: score 15.6, E = 1.2 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ +G + ++g+ e+A++ ++kA+ l+++ mKIAA0719 563 DFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSE 596 //