hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08106/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0717  ( 616 res)   mbg08106

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
small_GTP small_GTP: small GTP-binding protein domain    36.6    5.7e-07   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
small_GTP   1/1      36   229 ..     1   186 []    36.6  5.7e-07

Alignments of top-scoring domains:
small_GTP: domain 1 of 1, from 36 to 229: score 36.6, E = 5.7e-07
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptd.gttrdyvte
                        +ik+++vGd +vGk+ l+   + n    t+++   + +    + +
   mKIAA0717    36    VETIKCVVVGDNAVGKTRLICARACNA-TLTQYQLLAtHVPTVWAID 81   

                   sieedgktit.gat.fqW.gykfnllDtpGlhrqedydalrrlyypevls
                   + ++  + ++++       ++ + l+Dt G     d  ++rr  y ++++
   mKIAA0717    82 QYRVCQEVLErSRDvVDDvSVSLRLWDTFG-----DHHKDRRFAYGRSDV 126  

                   slevldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekp
                   ++ +++++++ +++  +++ +++ei+h+++   +p++lvg + dl+ +  
   mKIAA0717   127 VVLCFSIANP-NSLHHVKTMWYPEIKHFCP--RAPVILVGCQLDLRYADL 173  

                   gyf..............vdlkphlaslfaklngephfiplsaetgkgids
                   + +++ +++  ++ ++++ l+p+ ++++ak  g p + ++s++   gi +
   mKIAA0717   174 EAVnrarrplarpikpnEILPPEKGREVAKELGIP-YYETSVVAQFGIKD 222  

                   lfglvea<-*
                   +f++  +   
   mKIAA0717   223 VFDNAIR    229  

//