hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg08106/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0717 ( 616 res) mbg08106 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RHO Rho (Ras homology) subfamily of Ras-like sma 134.3 1.3e-35 1 BTB Broad-Complex, Tramtrack and Bric a brac 106.8 2.4e-27 2 RAB Rab subfamily of small GTPases -29.2 1.9e-06 1 RAS Ras subfamily of RAS small GTPases -43.5 0.0002 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RAB 1/1 39 234 .. 1 172 [] -29.2 1.9e-06 RAS 1/1 36 234 .. 1 167 [] -43.5 0.0002 RHO 1/1 41 234 .. 1 180 [] 134.3 1.3e-35 BTB 1/2 290 496 .. 1 114 [] 65.0 9.4e-15 BTB 2/2 524 616 .] 1 114 [] 41.8 8.9e-08 Alignments of top-scoring domains: RAB: domain 1 of 1, from 39 to 234: score -29.2, E = 1.9e-06 *->FKiilIGDSGVGKSsLLsR......FtddkFsedsksTI.GVD.Fkt K +++GD +VGK+ L++ + + + t + + +T+ +D++++ mKIAA0717 39 IKCVVVGDNAVGKTRLICAracnatLTQYQLLATHVPTVwAIDqYRV 85 ktiev.......dGkrvKLQIWDTAGQE....RFRSiTssYYRGAvGalL + ++++++ d+ v L +WDT G ++++RF Y ++ ++L mKIAA0717 86 CQEVLersrdvvDDVSVSLRLWDTFGDHhkdrRFA------YGRSDVVVL 129 VYDiTnreSFenlkn.WlkelreyadpppenvvimLVGNKsDLee..qRq ++ i n++S ++k W e++ ++ +++LVG+ DL+ + + mKIAA0717 130 CFSIANPNSLHHVKTmWYPEIKHFCPR----APVILVGCQLDLRYadLEA 175 Vst.................EeaekficDcAeehgllFifETSAKtntNV V++ +++ ++ ++++ ++E +++ A+e+g++++ ETS + + + mKIAA0717 176 VNRarrplarpikpneilppEKGREV----AKELGIPYY-ETSVVAQFGI 220 eeAFeelakkIlkr<-* +++F + ++ l mKIAA0717 221 KDVFDNAIRAALIS 234 RAS: domain 1 of 1, from 36 to 234: score -43.5, E = 0.0002 *->mreYKlVVlGgGGVGKSALTiQ......FiqghFvdeYDPTI..EDS +++ K VV+G+ VGK+ L + + +++q + + ++ PT D+ mKIAA0717 36 VETIKCVVVGDNAVGKTRLICAracnatLTQYQLLATHVPTVwaIDQ 82 YR..Kqi......eiDgevalLDILDTAGQeEFsAMRdqYmRtG..eGFl YR +++ +++++++D+ + L DT G + d + G+++ + mKIAA0717 83 YRvcQEVlersrdVVDDVSVSLRLWDTFGDHH----KDRRFAYGrsDVVV 128 LVYSitsrqSFeeikkf.reqIlRVKdrddvPivLVGNKcDLen...... L++Si + +S +++k++ + I r P++LVG DL + + mKIAA0717 129 LCFSIANPNSLHHVKTMwYPEIKHFCPR--APVILVGCQLDLRYadleav 176 .............eRqVsteEGkeLAkqlncpFlEtSAKerinVdeaFyd ++ +++ ++ ++ e G+e+Ak+l++p++EtS ++ + ++F mKIAA0717 177 nrarrplarpikpNEILPPEKGREVAKELGIPYYETSVVAQFGIKDVFDN 226 LVReirks<-* +R + s mKIAA0717 227 AIRAALIS 234 RHO: domain 1 of 1, from 41 to 234: score 134.3, E = 1.3e-35 *->lVvVGDGaVGKTCLLisYTtnaFPedY......VPTVF..ENYsadv +VvVGD aVGKT L + + na ++Y+ ++VPTV + Y ++ mKIAA0717 41 CVVVGDNAVGKTRLICARACNATLTQYqllathVPTVWaiDQYRVCQ 87 ev.......pDgkpvnLgLWDTAGQEdYDRLRPLSYPqtDVfLiCFSVds ev +++++ D+ v+L LWDT G d R Y +DV+ +CFS+ + mKIAA0717 88 EVlersrdvVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIAN 135 paSfeNVkeKWyPEvkhfcPnvPiiLVGtKlDLR.nDedtleelsekkqe p+S+ Vk++WyPE+khfcP +P+iLVG++lDLR D +++++ +++ mKIAA0717 136 PNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRyADLEAVNRARRPLAR 185 Pvt......teqGeanskialAkeIGAvkYlECSAltqeGvkeVFeeAir P+++++ ++e+G++ +Ake+G Y E+S q G+k+VF+ Air mKIAA0717 186 PIKpneilpPEKGRE-----VAKELGI-PYYETSVVAQFGIKDVFDNAIR 229 aaLnk<-* aaL + mKIAA0717 230 AALIS 234 BTB: domain 1 of 2, from 290 to 496: score 65.0, E = 9.4e-15 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. Dv+lv ++ +++++a Hk +L+++ S+ F++lf+ + mKIAA0717 290 ADVILVLQE--------RVRIFA--HKIYLSTS---SSKFYDLFLMd 323 .................................................. ++++ ++++++++++++++++++++++++++++++++ + + + + mKIAA0717 324 lsegelggpsgsggprpedhrshpeqhhhhhhhhhgrdfllraasfdvce 373 .................................................. + ++ +++++ + + +++++ ++++++ +++++ ++ ++ + +++ mKIAA0717 374 svdeaggsgpaglrastsdgilrgngtgylpgrgrvlsswsrafvsiqee 423 ...............ieldDeallievspeaFralLnflYt.kldlpeed +++ + +++ + +d +++p Fra+L++lYt++l +e mKIAA0717 424 maedpltfksrlmvvVKMDN-----SIQPGPFRAVLKYLYTgELGENER- 467 venveelLelAdfldSYGqip.lvelCeefllknl<-* +++++ ++A++l ++ +l+ ++ ++l + mKIAA0717 468 --DLMHIAHIAELL----EVFdLRMMVANILNNEA 496 BTB: domain 2 of 2, from 524 to 616: score 41.8, E = 8.9e-08 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. +Dvt++ ++ ++a Hk +L ++ ++ a+f ++ mKIAA0717 524 SDVTFILDD---------GTISA--HKPLLISS---CDWMAAMFGGp 556 ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel +++++++ ++ s +++ra+L++lYt+ + +++ ++ ++l mKIAA0717 557 fvesstreVVFPY------TSKSCMRAVLEYLYTgMFTSSPD--LDDMKL 598 LelAdfldSYGqip.lvelCeefllknl<-* + lA++l ++p+lv l+ mKIAA0717 599 IVLANRL----CLPhLVA------LTGN 616 //