hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08106/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0717  ( 616 res)   mbg08106

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ras      Ras family                                      65.1    1.5e-15   1
BTB      BTB/POZ domain                                  46.5    6.1e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ras        1/1      40   233 ..     1   174 []    65.1  1.5e-15
BTB        1/2     284   496 ..     1   135 []     9.3   0.0033
BTB        2/2     514   614 ..     1   135 []    37.2  3.7e-07

Alignments of top-scoring domains:
Ras: domain 1 of 1, from 40 to 233: score 65.1, E = 1.5e-15
                   *->KlVlvGDgGVGKSsLliR......FtdnkFpeeYipTI.GvDFytkt
                      K+V+vGD +VGK+ L + +  + + t+ +    ++pT+  +D y+  
   mKIAA0717    40    KCVVVGDNAVGKTRLICAracnatLTQYQLLATHVPTVwAIDQYRVC 86   

                   vevd........gktvkLqIWDTAGQErFralrpaYYRgAqGfLLVYDIT
                    ev +++++  ++  v L +WDT G  + +  r+  Y  +++++L+++I 
   mKIAA0717    87 QEVLersrdvvdDVSVSLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIA 134  

                   srdSFenvk.kWleeilrhadkdenvpivLVGNKcDLeddedlele.kq.
                   ++ S+++vk+ W++ei+++++     p++LVG   DL+ ++   le +++
   mKIAA0717   135 NPNSLHHVKtMWYPEIKHFCP--R-APVILVGCQLDLRYAD---LEaVNr 178  

                   ...........kRqVsteeGealAkelgAlpFmETSAKtneNVeeaFeel
                    +++  ++ ++ +  ++e G++ Akelg +p++ETS   + +++++F+++
   mKIAA0717   179 arrplarpikpNEILPPEKGREVAKELG-IPYYETSVVAQFGIKDVFDNA 227  

                   areilk<-*
                   +r++l    
   mKIAA0717   228 IRAALI    233  

BTB: domain 1 of 2, from 284 to 496: score 9.3, E = 0.0033
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      l++ ++     DV+Lv ++        ++++AHK +L+ +S+ F++l
   mKIAA0717   284    LEDPLCA----DVILVLQE-------RVRIFAHKIYLSTSSSKFYDL 319  

                   Ftgqfke.s.........................................
                   F+ ++ e+  ++++++++++++++++++++++++++++++++   +  + 
   mKIAA0717   320 FLMDLSEgElggpsgsggprpedhrshpeqhhhhhhhhhgrdfllraasf 369  

                   ..................................................
                   +  ++ ++ +++++ + + +++++  ++++++  +++++  ++ ++   +
   mKIAA0717   370 dvcesvdeaggsgpaglrastsdgilrgngtgylpgrgrvlsswsrafvs 419  

                   .........iteeessvsseieledvspedfealLefiYtgelsitqdqk
                    +++  ++++t++ + ++++ + + ++p  f+a+L+++Ytgel  +    
   mKIAA0717   420 iqeemaedpLTFKSRLMVVVKMDNSIQPGPFRAVLKYLYTGELGEN---- 465  

                   sPssckseenvedlLalAadllqipslvdkCeefliksl<-*
                          e +++++ ++A +ll++ +l+ ++ + l +     
   mKIAA0717   466 -------ERDLMHIAHIA-ELLEVFDLRMMVANILNNEA    496  

BTB: domain 2 of 2, from 514 to 614: score 37.2, E = 3.7e-07
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                       +e + +g ++DVt+  +d         ++ AHK  L ++ +   a+
   mKIAA0717   514    VKECLAKGTFSDVTFILDD--------GTISAHKPLLISSCDWMAAM 552  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F g       + ess + e+  +  s + ++a+Le++Ytg  + +     
   mKIAA0717   553 FGGP------FVESSTR-EVVFPYTSKSCMRAVLEYLYTGMFTSSP---- 591  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                         + + ++l+ lA ++l +p+        l+  +   
   mKIAA0717   592 ------DLDDMKLIVLA-NRLCLPH--------LVALT    614  

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