hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg02304/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0716 ( 2035 res) mbg02304 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SH3 Src homology 3 domains 48.0 1.2e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SH3 1/1 66 123 .. 1 58 [] 48.0 1.2e-09 Alignments of top-scoring domains: SH3: domain 1 of 1, from 66 to 123: score 48.0, E = 1.2e-09 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnr.tGke +y v++ ++ ++ + Ls++ GD++++lek dgW++G ++ + + mKIAA0716 66 KYGVVIASFRGTVPYGLSLEIGDTVQILEK-CDGWYRGFALKnPNIK 111 GlfPsnYVeeie<-* G+fPs+YV +++ mKIAA0716 112 GIFPSSYVHLKN 123 //