hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02304/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0716  ( 2035 res)   mbg02304

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ded_cyto Dedicator of cytokinesis                        50.8      3e-11   1
SH3_2    Variant SH3 domain                              32.4      1e-05   1
SH3_1    SH3 domain                                      25.9    0.00035   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_2      1/1      67   121 ..     1    69 []    32.4    1e-05
SH3_1      1/1      66   122 ..     1    58 []    25.9  0.00035
Ded_cyto   1/1    1471  1646 ..     1   192 []    50.8    3e-11

Alignments of top-scoring domains:
SH3_2: domain 1 of 1, from 67 to 121: score 32.4, E = 1e-05
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl
                      yg++i ++ + t +++      Lsl+ Gd+v ++     ++ dgw++
   mKIAA0716    67    YGVVIASFRG-TVPYG------LSLEIGDTVQIL-----EKCDGWYR 101  

                   g.eslgg.GrrrRGlvPssaveel<-*
                   g  + ++++ +  G +Pss+v +l   
   mKIAA0716   102 GfAL-KNpNIK--GIFPSSYV-HL    121  

SH3_1: domain 1 of 1, from 66 to 122: score 25.9, E = 0.00035
                   *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkg.rlkgtgGk
                      k+ v++  + ++ +  Ls++ GD++++lek d+ W++g  lk+ +  
   mKIAA0716    66    KYGVVIASFRGTVPYGLSLEIGDTVQILEKCDG-WYRGfALKNPN-I 110  

                   eGliPsNYVepv<-*
                   +G++Ps+YV ++   
   mKIAA0716   111 KGIFPSSYVHLK    122  

Ded_cyto: domain 1 of 1, from 1471 to 1646: score 50.8, E = 3e-11
                   *->tyFernnnvrrFmyetPFTknGtAtkaQ.GeleEQwKRkTiLttens
                        F + n +  F y+ PF k +   k  ++e+  +w+ +T L    s
   mKIAA0716  1471    KSFYKVNHIWKFRYDRPFHKGA---KDKeNEFKSLWVERTSLYLVQS 1514 

                   FPyiktRilVisreeielsPIEVAIedIqkKtaeLaaainqppadtlpdi
                    P i +   V +re++e sP E+AIe  + K+++L  +i+q +  ++  i
   mKIAA0716  1515 LPGISRWFEVEKREVVEMSPLENAIEVLENKNQQLKTLISQCQTRQMQNI 1564 

                   kmLQmvLQGSVgvtVNaGPLevAr.aFLseepLkadplGrPpdkhinkLr
                    +L+m L+G +++ VN+G ++++++aF   +++   p+      +i+ Lr
   mKIAA0716  1565 NPLTMCLNGVIDAAVNGG-VSRYQeAFFVKDYILSHPE---DGEKIARLR 1610 

                   lvfreFikrCkrALevnkrLIgeDQkEYqreLkeNYekLkeeLsplI<-*
                   +  +e     +  L+v++  +  D            + L+++L +     
   mKIAA0716  1611 ELMLEQAQILEFGLAVHEKFVPQDM-----------RPLHKKLVDQF    1646 

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