hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10304/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0713  ( 577 res)   mbg10304

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PX       PhoX homologous domain, present in p47phox a   119.1    4.8e-31   1
RGS      Regulator of G protein signalling domain       102.5      5e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RGS        1/1       1   133 [.     1   143 []   102.5    5e-26
PX         1/1     183   296 ..     1   142 []   119.1  4.8e-31

Alignments of top-scoring domains:
RGS: domain 1 of 1, from 1 to 133: score 102.5, E = 5e-26
                   *->sfesLldrdpiGrllFreFLkkefsepkenleFWlaceefkktedkk
                         ++       ++ F+++++++ ++   +l FW+ +e +++t +++
   mKIAA0713     1    ---NVA------LQFFMDYMQQTGGQ--AHLFFWMTVEGYRVTAQQQ 36   

                   lkvld.....l.s.kdsegeersekAkeIydeflspnapksevnidsdlr
                   l+vl +++++++ +   ++  ++++A  Iy+++ls++a   +v +d++l+
   mKIAA0713    37 LEVLSgrqrdGkQqTNQTKGLLRAAAVGIYEQYLSEKASP-RVTVDDYLV 85   

                   ektesnlkeeielKdgqpdpdlFdeaqkevytlmekd.rsyprFLrSdlY
                   +k +++l++e       p+p++Fd+ q+ vy+lm +d+r+yp F++  lY
   mKIAA0713    86 AKLADTLNHE------DPTPEIFDDIQRKVYELMLRDeRFYPSFRQNALY 129  

                   lrfL<-*
                    r+L   
   mKIAA0713   130 VRML    133  

PX: domain 1 of 1, from 183 to 296: score 119.1, E = 4.8e-31
                   *->dniaivavveeetsgkkrgdgkhyyyvieietstnedveewtvyRRY
                       +i+ + v +++       ++ +++y+i +++++ + +e+w++yRRY
   mKIAA0713   183    AYISDTGVCNDH-------GKTYALYAITVHRRNLNTEEMWKTYRRY 222  

                   sdFleLhskLlkkfpqekrrriiPplPekkllgryreraekesmkvkksl
                   sdF+++h+++ ++f +   ++ i +lP+kk+                  +
   mKIAA0713   223 SDFHDFHMRITEQFEN---LSSILKLPGKKT------------------F 251  

                   nnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<-*
                   nn++++f+ekR+++L++YLq ll  +++ + +++ ++v++FLe++   
   mKIAA0713   252 NNMDRDFLEKRKKDLNAYLQLLLTPEMMKASPALAHCVYDFLENK    296  

//