hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10304/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0713  ( 577 res)   mbg10304

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PX       PX domain                                      106.6    4.8e-28   1
RGS      Regulator of G protein signaling domain          0.6     0.0024   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RGS        1/1       1   133 [.     1   155 []     0.6   0.0024
PX         1/1     183   296 ..     1   133 []   106.6  4.8e-28

Alignments of top-scoring domains:
RGS: domain 1 of 1, from 1 to 133: score 0.6, E = 0.0024
                   *->sfeklldkqpiGrllFreFLetefsepkenleFwlaveeykktespk
                        +  l         F ++ + +  +   +l Fw  ve y++t    
   mKIAA0713     1    --NVAL-------QFFMDYMQQTGGQ--AHLFFWMTVEGYRVTAQ-- 34   

                   ekrpsk.arekksr...........EtLaaAYGIydeFispeapkqniqd
                   + +++ ++r+   r+++++++++++   aaA GIy+ ++s++a       
   mKIAA0713    35 QQLEVLsGRQ---RdgkqqtnqtkgLLRAAAVGIYEQYLSEKASP----- 76   

                   esvefevnldsevvestqqnlkeavesepllkvLqptkdlFeeaqreiyt
                         v++d+++v++ +++l  +           pt+++F++ qr++y+
   mKIAA0713    77 -----RVTVDDYLVAKLADTLNHE----------DPTPEIFDDIQRKVYE 111  

                   lMrgD..SfprFLeSdyylrfl<-*
                   lM +D++ +p F +   y r l   
   mKIAA0713   112 LMLRDerFYPSFRQNALYVRML    133  

PX: domain 1 of 1, from 183 to 296: score 106.6, E = 4.8e-28
                   *->dsilivvvvdpetsrkkegskkhtyyvyeittktn...kewsVkRRY
                       +i+   v++++       +k ++ y++++++++ +++++w+++RRY
   mKIAA0713   183    AYISDTGVCNDH-------GKTYALYAITVHRRNLnteEMWKTYRRY 222  

                   sdFeeLhekLlrkfpalgrilPplPpKklfgryrkeslemtsvkhssnnf
                   sdF+++h++ +++f  +++ + +lP+Kk+f                 nn+
   mKIAA0713   223 SDFHDFHMRITEQFE-NLSSILKLPGKKTF-----------------NNM 254  

                   deefiekRrkgLeeyLqrllqhPelsn....esevvleFLesd<-*
                   d++f+ekR+k+L++yLq ll  Pe+++ ++   ++v++FLe     
   mKIAA0713   255 DRDFLEKRKKDLNAYLQ-LLLTPEMMKaspaLAHCVYDFLENK    296  

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