hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm08013/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0710 ( 1172 res) mpm08013 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EXOIII No definition 83.5 2.5e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EXOIII 1/1 944 1127 .. 1 196 [] 83.5 2.5e-20 Alignments of top-scoring domains: EXOIII: domain 1 of 1, from 944 to 1127: score 83.5, E = 2.5e-20 *->tlvviDcEtTGpdne.geldpg..........deIiEiaaVdvdg.. +lv +D E++ + e+ el ++++++ ++++ +++i++V+ +g++ mKIAA0710 944 DLVGLDAEFVTLNEEeAELRSDgtkstikpsqMSVARITCVRGQGpn 990 ...evfdtlVkPddrpipdyateihGSIteemlddgrsaaptfe...... ++ d ++ ++++dy t+++G I++ +ld +++ ++ ++ + mKIAA0710 991 egiPFIDDYIST-QEQVVDYLTQYSG-IKPGDLDA----KISSKhlttlk 1034 eVleelleflkgsippgkegvclvagNsanfDlrfLklehprlglkeppk + +l+ +++ ++ ++g+++ D+r+++l++p+ mKIAA0710 1035 STYLKLRFLIDIGV--------KFVGHGLQKDFRVINLMVPK-------- 1068 npflviDTadlaktlklarklfpglpkagrrkysLkkLaerlgleviq.. ++v+DT + l++ + r+ sL++La++++ iq++ mKIAA0710 1069 --DQVLDT------VYLFHMPRK-------RMISLRFLAWYFLDLKIQge 1103 .HrAldDArataklfkkllerlae<-* +H++++DAr++++l++k+le ++ mKIAA0710 1104 tHDSIEDARTALQLYRKYLELSKN 1127 //