hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08013/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0710  ( 1172 res)   mpm08013

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Exonuc_X-T Exonuclease                                   88.3    1.6e-22   1
UCH        Ubiquitin carboxyl-terminal hydrolase         -3.5    1.4e-05   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
UCH          1/1     519   892 ..     1   273 []    -3.5  1.4e-05
Exonuc_X-T   1/1     945  1118 ..     1   187 []    88.3  1.6e-22

Alignments of top-scoring domains:
UCH: domain 1 of 1, from 519 to 892: score -3.5, E = 1.4e-05
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl
                      + ++GL+    + Y+N+++Q L++  p r  + +  +++        
   mKIAA0710   519    TLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQK-------- 557  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx         xxxxxxxx
                   gskgsllcaladLfnalqsg.yksvvpsplkfl.........qfkttlgk
                     + +l+c+l  Lf++l +++  + + s ++ + ++ ++ +   + + ++
   mKIAA0710   558 --EFCLACELGFLFHMLDLSrGDPCQGSNFLRAfrtipeasaLGLILADS 605  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx
                   ineefsgymQqDAhEFllfLLdgLhedlnrvnkkpytepesdkrpd.kaa
                      +  g+     +   +f+L +Lh+d++              + ++ a 
   mKIAA0710   606 DEASGKGSLARLIQRWNRFILTQLHQDMQE-------------LEVpQAY 642  

                RF  xxxxxxxxxxxxxxxxxxxxxxxx                         
                   .eawknhslrneslitdlFqGqles.........................
                   + a  +  ++++s+i +lF  ++e+++ +++++++ + +++   + + ++
   mKIAA0710   643 rGAGGSFCSSGDSIIGQLFSCEMENcslcrcgsetvrasstllftlsype 692  

                RF     xxxxxxxxxxxxxxxxxxxxxxxx                      
                   ....rlkisrLPpiLiihLKRFkydget......................
                   ++ ++  i  LP+iL+i+ +  + ++    + + +   +   ++ +++ +
   mKIAA0710   693 gsiqTRNIRHLPDILVINCEVNSSKEADfwrlqaevafkiavkkyggemk 742  

                RF                    xxxxxxxxxxxxxxxxxxxxxxxxx      
                   ...................gmnkKindkVefPleLdlssyctae......
                   +++    ++++ +++++   + ++  ++V  P+ + ++ + + + +  + 
   mKIAA0710   743 skefaladrkelrspegflCSSIEELKNVWLPFSIRMKMTKNKGldvcnw 792  

                RF                         xxxxxxxxxxxxxxxxxxxxxxxxxx
                   ........................pplkYeLyaVvvHsGsslsgGHYiay
                    ++++ ++ + +++ ++   +++ + ++Y+L a vvH+  s +gG  +a+
   mKIAA0710   793 adehelsslgapsqwgparaeeelGVYVYDLMATVVHILDSRTGGSLVAH 842  

                RF xxx         xxxxxxxxxxxxxxxxxxxxxxxxx   xxxxxxxxxx
                   ikk.........kkknnkWykfDDekVsevseeevle...rsssAYiLFY
                   ik +++ +++++   +++Wy+f+D  +++++++e  + + +++ + iL+Y
   mKIAA0710   843 IKVgetyhqrkeGVTHQQWYLFNDFLIEPIDKYEAVQfdmNWKVPAILYY 892  

                RF    
                   <-*
                      
   mKIAA0710     -     -    

Exonuc_X-T: domain 1 of 1, from 945 to 1118: score 88.3, E = 1.6e-22
                   *->lvviDcEtTGldpkga.v.s.g.kstekdeiiEiaavsivngen...
                      lv +D E++ l+ ++a+ +s+g+kst+k    ++a++++v g+ +++
   mKIAA0710   945    LVGLDAEFVTLNEEEAeLrSdGtKSTIKPSQMSVARITCVRGQGpne 991  

                   igevfdtyvkPerppkitdyatefhGIteemlddapsfeevleefleflr
                   +++ +d y+   +   ++dy t+++GI + +ld + s +  l+++++ + 
   mKIAA0710   992 GIPFIDDYISTQEQ--VVDYLTQYSGIKPGDLDAKISSK-HLTTLKSTYL 1038 

                   klsilvahnnkgaafdvgflleedlrflklphpfsnikrndvidtlilar
                   kl  l+  +      +vg++l+ d+r+++l +p      ++v+dt+ l++
   mKIAA0710  1039 KLRFLIDIG----VKFVGHGLQKDFRVINLMVP-----KDQVLDTVYLFH 1079 

                   safkglkrgqktsLkaLaeklglekiqrgnaiaHrAldDArataelf<-*
                   +   ++kr +  sL++La++++  kiq +    H++++DAr++++l+   
   mKIAA0710  1080 M---PRKRMI--SLRFLAWYFLDLKIQGE---THDSIEDARTALQLY    1118 

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