hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file: /cdna4/rodent/full/goal/mpg/mpg01116/w3open/interpro/cnk_1/seq.in
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Query: mKIAA0709 ( 1001 res) mpg01116
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CLECT C-type lectin (CTL) or carbohydrate-recognit 603.2 8.9e-177 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CLECT 1/6 42 166 .. 1 141 [] 104.1 1.6e-26
CLECT 2/6 190 330 .. 1 141 [] 115.5 6.1e-30
CLECT 3/6 346 472 .. 1 141 [] 117.4 1.6e-30
CLECT 4/6 493 629 .. 1 141 [] 134.3 1.3e-35
CLECT 5/6 646 765 .. 1 141 [] 73.7 2.3e-17
CLECT 6/6 781 914 .. 1 141 [] 90.4 2.1e-22
Alignments of top-scoring domains:
CLECT: domain 1 of 6, from 42 to 166: score 104.1, E = 1.6e-26
*->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg
C +gW+++ + +CY++ ++ ++dA++ C+++g
mKIAA0709 42 C---RKGWTWH-------SPSCYWLGEdqviYSDARRLCTDHG---- 74
rvkgghLasIhseeEndFltsl........yWIGLs.....g.wqWsDGs
++L++I++ E++F++sl + +++ +W+ L++ +++g+++W G
mKIAA0709 75 ----SQLVTITNRFEQAFVSSLiynwegeyFWTALQdlnstGsFRWLSGD 120
gviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls.......W
v yt+W+++ +P +++g+Cv+l +++ + W
mKIAA0709 121 --------EVIYTHWNRD----QPG-------YRRGGCVALAtgsamglW 151
ndvsCtskdpadklpfiCk<-*
+Cts ++ ++iC
mKIAA0709 152 EVKNCTS----FRARYICR 166
CLECT: domain 2 of 6, from 190 to 330: score 115.5, E = 6.1e-30
*->CpstpsgWvsyprpnkyfggkCYkfst.........WadAqafCqsl
C p+gWvs p+ +CYk++++++ +++++W +A+ C++l
mKIAA0709 190 C---PQGWVSDPK-----LRHCYKVFSserlqekksWIQALGVCREL 228
gprtgrvkgghLasIhseeEndFltsl.................yWIGLs
g ++L+s s eE F++++ ++ +++++++++++ +WIGL+
mKIAA0709 229 G--------AQLLSLASYEEEHFVAHMlnkifgesepesheqhwFWIGLN 270
.......g.wqWsDGsgviplaltpvsytnWapgePnnePnnkfrhgngg
+++++++++w+WsDG g +sy n+a++ rh +++
mKIAA0709 271 rrdpregHsWRWSDGLG--------FSYHNFARS----------RHDDDD 302
ngdCvvls.....WndvsCtskdpadklpfiCk<-*
++C+vl+ + +W ++ C + +l +iCk
mKIAA0709 303 IRGCAVLDlaslqWVPMQCQT-----QLDWICK 330
CLECT: domain 3 of 6, from 346 to 472: score 117.4, E = 1.6e-30
*->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg
Wv++ + Ykf+ ++++Wa+Aq++C+ +
mKIAA0709 346 G---RLEWVRF-------QEAEYKFFEhhssWAQAQRICTWFQ---- 378
rvkgghLasIhseeEndFltsl...........yWIGLs.....g.wqWs
++L s+hs++E+dFl + ++ +++++++ WIGL++ +++g+++W+
mKIAA0709 379 ----ADLTSVHSQAELDFLGQNlqklssdqeqhWWIGLHtlesdGrFRWT 424
DGsgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls.....
DGs ++ Wapg P++ g++ Cv++ ++ +
mKIAA0709 425 DGS--------IINFISWAPG----KPRP-----IGKDKKCVYMTarqed 457
WndvsCtskdpadklpfiCk<-*
W d+ C++ lp+iCk
mKIAA0709 458 WGDQRCHT-----ALPYICK 472
CLECT: domain 4 of 6, from 493 to 629: score 134.3, E = 1.3e-35
*->CpstpsgWvsyprpnkyfggkCYkfst........WadAqafCqslg
C psgW+++ +kC+++ ++++++ +W++Aq++C+++
mKIAA0709 493 C---PSGWNQF-------LNKCFQIQGqdpqdrvkWSEAQFSCEQQE 529
prtgrvkgghLasIhseeEndFltsl.......yWIGLs...g.wqWsDG
++L++I ++ E++F+t ++ + + WIGL+ +++++qW+
mKIAA0709 530 --------AQLVTIANPLEQAFITASlpnvtfdLWIGLHasqRdFQWIEQ 571
sgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls.......
++ ytnWapgeP+ P++ +++ + +C+v+ ++++ +
mKIAA0709 572 E-------PLL-YTNWAPGEPS-GPSP--APSGTKPTSCAVILhspsahf 610
...WndvsCtskdpadklpfiCk<-*
+++W+d sCt+ ++++fiC+
mKIAA0709 611 tgrWDDRSCTE----ETHGFICQ 629
CLECT: domain 5 of 6, from 646 to 765: score 73.7, E = 2.3e-17
*->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg
p sy ++ +++ ++ +W dA+ C+s +
mKIAA0709 646 A---PGAELSY-------LNHTFRLLQkplrWKDALLLCESRN---- 678
rvkgghLasIhseeEndFltsl.......yWIGLs.....g.wqWsDGsg
++La + +++ ++Flt+ ++ +++ WIGL ++++++++ W
mKIAA0709 679 ----ASLAHVPDPYTQAFLTQAarglqtpLWIGLAseegsRrYSWLSEE- 723
viplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls....Wndvs
p +y W++ eP +g+C++++ +++W+++s
mKIAA0709 724 -------PLNYVSWQDE----EPQ--------HSGGCAYVDvdgtWRTTS 754
CtskdpadklpfiCk<-*
C++ + ++++C
mKIAA0709 755 CDT----KLQGAVCG 765
CLECT: domain 6 of 6, from 781 to 914: score 90.4, E = 2.1e-22
*->Cps..tpsgWvsyprpnkyfggkCYkfst.....WadAqafCqslgp
Cp++ +s W+++ +CY f+ + ++ +A++ Cq+ g
mKIAA0709 781 CPQglADSSWIPF-------REHCYSFHMevllgHKEALQRCQKAG- 819
rtgrvkgghLasIhseeEndFltsl..........yWIGLs.....g.wq
g+ +sI +e En F++++ ++ + +++++W+G++ ++++g+ +
mKIAA0709 820 -------GTVLSILDEMENVFVWEHlqtaeaqsrgAWLGMNfnpkgGtLV 862
WsDGsgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls...
W D++ +v+y+nW+p P+ + + ++C + +++
mKIAA0709 863 WQDNT--------AVNYSNWGPPGL--GPS------MLSHNSCYWIQsss 896
..WndvsCtskdpadklpfiCk<-*
+ W++ Ct+ +++ +Ck
mKIAA0709 897 glWRPGACTN----ITMGVVCK 914
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