hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpg/mpg01116/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0709 ( 1001 res) mpg01116 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CLECT C-type lectin (CTL) or carbohydrate-recognit 603.2 8.9e-177 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CLECT 1/6 42 166 .. 1 141 [] 104.1 1.6e-26 CLECT 2/6 190 330 .. 1 141 [] 115.5 6.1e-30 CLECT 3/6 346 472 .. 1 141 [] 117.4 1.6e-30 CLECT 4/6 493 629 .. 1 141 [] 134.3 1.3e-35 CLECT 5/6 646 765 .. 1 141 [] 73.7 2.3e-17 CLECT 6/6 781 914 .. 1 141 [] 90.4 2.1e-22 Alignments of top-scoring domains: CLECT: domain 1 of 6, from 42 to 166: score 104.1, E = 1.6e-26 *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg C +gW+++ + +CY++ ++ ++dA++ C+++g mKIAA0709 42 C---RKGWTWH-------SPSCYWLGEdqviYSDARRLCTDHG---- 74 rvkgghLasIhseeEndFltsl........yWIGLs.....g.wqWsDGs ++L++I++ E++F++sl + +++ +W+ L++ +++g+++W G mKIAA0709 75 ----SQLVTITNRFEQAFVSSLiynwegeyFWTALQdlnstGsFRWLSGD 120 gviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls.......W v yt+W+++ +P +++g+Cv+l +++ + W mKIAA0709 121 --------EVIYTHWNRD----QPG-------YRRGGCVALAtgsamglW 151 ndvsCtskdpadklpfiCk<-* +Cts ++ ++iC mKIAA0709 152 EVKNCTS----FRARYICR 166 CLECT: domain 2 of 6, from 190 to 330: score 115.5, E = 6.1e-30 *->CpstpsgWvsyprpnkyfggkCYkfst.........WadAqafCqsl C p+gWvs p+ +CYk++++++ +++++W +A+ C++l mKIAA0709 190 C---PQGWVSDPK-----LRHCYKVFSserlqekksWIQALGVCREL 228 gprtgrvkgghLasIhseeEndFltsl.................yWIGLs g ++L+s s eE F++++ ++ +++++++++++ +WIGL+ mKIAA0709 229 G--------AQLLSLASYEEEHFVAHMlnkifgesepesheqhwFWIGLN 270 .......g.wqWsDGsgviplaltpvsytnWapgePnnePnnkfrhgngg +++++++++w+WsDG g +sy n+a++ rh +++ mKIAA0709 271 rrdpregHsWRWSDGLG--------FSYHNFARS----------RHDDDD 302 ngdCvvls.....WndvsCtskdpadklpfiCk<-* ++C+vl+ + +W ++ C + +l +iCk mKIAA0709 303 IRGCAVLDlaslqWVPMQCQT-----QLDWICK 330 CLECT: domain 3 of 6, from 346 to 472: score 117.4, E = 1.6e-30 *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg Wv++ + Ykf+ ++++Wa+Aq++C+ + mKIAA0709 346 G---RLEWVRF-------QEAEYKFFEhhssWAQAQRICTWFQ---- 378 rvkgghLasIhseeEndFltsl...........yWIGLs.....g.wqWs ++L s+hs++E+dFl + ++ +++++++ WIGL++ +++g+++W+ mKIAA0709 379 ----ADLTSVHSQAELDFLGQNlqklssdqeqhWWIGLHtlesdGrFRWT 424 DGsgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls..... DGs ++ Wapg P++ g++ Cv++ ++ + mKIAA0709 425 DGS--------IINFISWAPG----KPRP-----IGKDKKCVYMTarqed 457 WndvsCtskdpadklpfiCk<-* W d+ C++ lp+iCk mKIAA0709 458 WGDQRCHT-----ALPYICK 472 CLECT: domain 4 of 6, from 493 to 629: score 134.3, E = 1.3e-35 *->CpstpsgWvsyprpnkyfggkCYkfst........WadAqafCqslg C psgW+++ +kC+++ ++++++ +W++Aq++C+++ mKIAA0709 493 C---PSGWNQF-------LNKCFQIQGqdpqdrvkWSEAQFSCEQQE 529 prtgrvkgghLasIhseeEndFltsl.......yWIGLs...g.wqWsDG ++L++I ++ E++F+t ++ + + WIGL+ +++++qW+ mKIAA0709 530 --------AQLVTIANPLEQAFITASlpnvtfdLWIGLHasqRdFQWIEQ 571 sgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls....... ++ ytnWapgeP+ P++ +++ + +C+v+ ++++ + mKIAA0709 572 E-------PLL-YTNWAPGEPS-GPSP--APSGTKPTSCAVILhspsahf 610 ...WndvsCtskdpadklpfiCk<-* +++W+d sCt+ ++++fiC+ mKIAA0709 611 tgrWDDRSCTE----ETHGFICQ 629 CLECT: domain 5 of 6, from 646 to 765: score 73.7, E = 2.3e-17 *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg p sy ++ +++ ++ +W dA+ C+s + mKIAA0709 646 A---PGAELSY-------LNHTFRLLQkplrWKDALLLCESRN---- 678 rvkgghLasIhseeEndFltsl.......yWIGLs.....g.wqWsDGsg ++La + +++ ++Flt+ ++ +++ WIGL ++++++++ W mKIAA0709 679 ----ASLAHVPDPYTQAFLTQAarglqtpLWIGLAseegsRrYSWLSEE- 723 viplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls....Wndvs p +y W++ eP +g+C++++ +++W+++s mKIAA0709 724 -------PLNYVSWQDE----EPQ--------HSGGCAYVDvdgtWRTTS 754 CtskdpadklpfiCk<-* C++ + ++++C mKIAA0709 755 CDT----KLQGAVCG 765 CLECT: domain 6 of 6, from 781 to 914: score 90.4, E = 2.1e-22 *->Cps..tpsgWvsyprpnkyfggkCYkfst.....WadAqafCqslgp Cp++ +s W+++ +CY f+ + ++ +A++ Cq+ g mKIAA0709 781 CPQglADSSWIPF-------REHCYSFHMevllgHKEALQRCQKAG- 819 rtgrvkgghLasIhseeEndFltsl..........yWIGLs.....g.wq g+ +sI +e En F++++ ++ + +++++W+G++ ++++g+ + mKIAA0709 820 -------GTVLSILDEMENVFVWEHlqtaeaqsrgAWLGMNfnpkgGtLV 862 WsDGsgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls... W D++ +v+y+nW+p P+ + + ++C + +++ mKIAA0709 863 WQDNT--------AVNYSNWGPPGL--GPS------MLSHNSCYWIQsss 896 ..WndvsCtskdpadklpfiCk<-* + W++ Ct+ +++ +Ck mKIAA0709 897 glWRPGACTN----ITMGVVCK 914 //