hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg01116/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0709  ( 1001 res)   mpg01116

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Lectin_C Lectin C-type domain                           373.5   2.1e-108   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Lectin_C   1/6      59   167 ..     1   125 []    88.9  1.1e-22
Lectin_C   2/6     214   331 ..     1   125 []    56.1  7.7e-13
Lectin_C   3/6     363   473 ..     1   125 []    78.0  1.9e-19
Lectin_C   4/6     514   630 ..     1   125 []    90.3  3.9e-23
Lectin_C   5/6     663   766 ..     1   125 []    62.4  9.6e-15
Lectin_C   6/6     804   915 ..     1   125 []    20.7  5.4e-05

Alignments of top-scoring domains:
Lectin_C: domain 1 of 6, from 59 to 167: score 88.9, E = 1.1e-22
                   *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.snt
                       +  + +A+  C+ +g++  Lv+I ++ Eq    af++sl+ +   +
   mKIAA0709    59    DQVIYSDARRLCTDHGSQ--LVTITNRFEQ----AFVSSLIYNwEGE 99   

                   yaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdC
                   y+W+ L d n+ g++ w     +g  v yt +W++++P +++    ++ C
   mKIAA0709   100 YFWTALQDLNSTGSFRW----LSGDEVIYT-HWNRDQP-GYR----RGGC 139  

                   veiytdtdflaGkWnDepCdskl.pyvCef<-*
                   v++ t+++   G+W  ++C s + +y+C     
   mKIAA0709   140 VALATGSA--MGLWEVKNCTSFRaRYICRQ    167  

Lectin_C: domain 2 of 6, from 214 to 331: score 56.1, E = 7.7e-13
                   *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk....
                      e+k+W +A   C+++g++  L+s  s+eE  fv+  l++++++++++
   mKIAA0709   214    EKKSWIQALGVCRELGAQ--LLSLASYEEEHFVAHMLNKIFGEsepe 258  

                   ..sntyaWIGLt..dintegtwvwegwetdgspvnyt.enWapgePnnrg
                   ++ ++ +WIGL+++d+   ++w w    +dg + +y ++  ++ + ++ +
   mKIAA0709   259 shEQHWFWIGLNrrDPREGHSWRW----SDGLGFSYHnFARSRHDDDDIR 304  

                   nhGgnEdCveiytdtdflaGkWnDepCdsklpyvCef<-*
                   +      C+++       + +W  + C+++l ++C+    
   mKIAA0709   305 G------CAVLDLA----SLQWVPMQCQTQLDWICKI    331  

Lectin_C: domain 3 of 6, from 363 to 473: score 78.0, E = 1.9e-19
                   *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty
                         +Wa+A+  C+  +++  L+s++s++E +f+   l++l ++  + 
   mKIAA0709   363    HHSSWAQAQRICTWFQAD--LTSVHSQAELDFLGQNLQKLSSDQEQH 407  

                   aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv
                    WIGL+   ++g + w    tdgs  n+   Wapg P   g    +  Cv
   mKIAA0709   408 WWIGLHTLESDGRFRW----TDGSIINFI-SWAPGKPRPIGK---DKKCV 449  

                   eiytdtdflaGkWnDepCdsklpyvCef<-*
                    +++        W D  C + lpy+C++   
   mKIAA0709   450 YMTARQE----DWGDQRCHTALPYICKR    473  

Lectin_C: domain 4 of 6, from 514 to 630: score 90.3, E = 3.9e-23
                   *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty
                       +  W eA+  C+++ ++  Lv+I ++ Eq    af+t  +++  ++
   mKIAA0709   514    DRVKWSEAQFSCEQQEAQ--LVTIANPLEQ----AFITASLPNVTFD 554  

                   aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnh...GgnE
                   +WIGL+   +  +++w    +  +p+ yt nWapgeP++    +++    
   mKIAA0709   555 LWIGLH--ASQRDFQW----IEQEPLLYT-NWAPGEPSGPSPApsgTKPT 597  

                   dCveiytdtdfl..aGkWnDepCdskl.pyvCef<-*
                    C++i  + ++++ +G+W+D++C +  ++++C++   
   mKIAA0709   598 SCAVILHS-PSAhfTGRWDDRSCTEEThGFICQK    630  

Lectin_C: domain 5 of 6, from 663 to 766: score 62.4, E = 9.6e-15
                   *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty
                      ++  W +A l C++++++  L+ + +++ q    aflt+ +   +t 
   mKIAA0709   663    KPLRWKDALLLCESRNAS--LAHVPDPYTQ----AFLTQAARGLQTP 703  

                   aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv
                   +WIGL  + ++  + w     + +p+ny   W + eP++ g+      C+
   mKIAA0709   704 LWIGLASEEGSRRYSW----LSEEPLNYV-SWQDEEPQHSGG------CA 742  

                   eiytdtdflaGkWnDepCdskl.pyvCef<-*
                    +  d     G W   +Cd+kl+++vC     
   mKIAA0709   743 YVDVD-----GTWRTTSCDTKLqGAVCGV    766  

Lectin_C: domain 6 of 6, from 804 to 915: score 20.7, E = 5.4e-05
                   *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty
                            eA + Cqk+gg+   +sI ++ E+ fv++ l +++++ +  
   mKIAA0709   804    VLLGHKEALQRCQKAGGT--VLSILDEMENVFVWEHL-QTAEAQSRG 847  

                   aWIGLtdintegtwvwegwetdgspvnytenWap...gePnnrgnhGgnE
                   aW+G++ +++ gt vw     d++ vny+ nW p++ g++   +n     
   mKIAA0709   848 AWLGMNFNPKGGTLVW----QDNTAVNYS-NWGPpglGPSMLSHN----- 887  

                   dCveiytdtdflaGkWnDepCdskl.pyvCef<-*
                    C  i+++    +G+W   +C     ++vC+    
   mKIAA0709   888 SCYWIQSS----SGLWRPGACTNITmGVVCKL    915  

//