hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg06040/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0708 ( 2228 res) mbg06040 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Cullin Cullin family 255.8 5.8e-73 1 IBR IBR domain 63.9 3.4e-15 2 APC10 Anaphase-promoting complex, subunit 10 (APC1 -63.7 0.0058 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- APC10 1/1 856 1032 .. 1 222 [] -63.7 0.0058 Cullin 1/1 1088 1540 .. 1 656 [] 255.8 5.8e-73 IBR 1/2 1842 1905 .. 1 72 [] 74.9 1.7e-18 IBR 2/2 1927 1981 .. 1 72 [] -2.2 0.2 Alignments of top-scoring domains: APC10: domain 1 of 1, from 856 to 1032: score -63.7, E = 0.0058 *->itanatpssrgdlsqkeleGfaevlsqrvreigelAvW...slSScK ++ t + + +G +e+ e W++ +SS mKIAA0708 856 TYKPITIPFFDVFLRHLCQGS-------SVEVKEDRCWekvEVSSNP 895 pGngVlfllRDdnldTyWQSDGsqP.HlvnIqFsKktdIkyvaiYldykl + l D n TyW S+Gs +H + ++ + I ++ + + + mKIAA0708 896 HRASKL--T-DRNPKTYWESNGSTGsHSITLHMHRGVLIRQLTLLVASE- 941 DESYtPskirVraGtgfnDl.qevktleveeGQPtGWVhIplredAGDDG D SY P ++ V G++ + ++e+ t+ v + ++l+ mKIAA0708 942 DSSYMPARVVVFGGDNVGCIsTELNTVNVMP-SAS---RVTLL------- 980 DDVEGGGPNDGGDgreDDkllrvf.mlQiavlaNHqnGrDthvRqIriYg e +l+r + +Qi + +q G Dt vR+ ++g mKIAA0708 981 ---------------E--NLTRFWpIIQIRIKRCQQGGIDTRVRGVEVLG 1013 PviershvphqlfhgNHATptsvdfqtyatl<-* P + lf + + ++ l mKIAA0708 1014 PKPT----FWPLFRE--------QLCRRTCL 1032 Cullin: domain 1 of 1, from 1088 to 1540: score 255.8, E = 5.8e-73 *->WekLrdaidqilt..nlknvsplsyeeLYtaVYniCtstsavphklg We L + + q +t+++ ++vs+l + mKIAA0708 1088 WEALVSPLVQNITspDAGGVSSLGW---------------------- 1112 ekLYnrLkeyleeyvkalrkslleisddenlLkeyikeWkdfstsmkmin mKIAA0708 - -------------------------------------------------- - difmYLdRyyvkrnidgkkevyeiyeLgLdiWreelfdnikdrlidalLd l+d+ mKIAA0708 1113 -----------------------------------LLDQ----------- 1116 lIekeRkGeaidrliknvvdmlvsLgldekDmkkqklkvYkedFEkpFLe mKIAA0708 - -------------------------------------------------- - aTseFYkkEsskfLqensvseYlkkvEkrLeeEeeRvrlYLhsstekkli Yl+ ++E+ R+r mKIAA0708 1117 ---------------------YLE------HRESTRSR------------ 1127 evvekvLIekHlefLlmehsefqLldnnkleDLrrMYrLlsRvpnGLepl +++ mKIAA0708 1128 -----------------------------------------------QGP 1130 rkilekhvkkeGlalvskla.............................. ++ + + v++ ++ lv+ +a++++++++++++ +++++++++++++ +++ mKIAA0708 1131 AASFASQVRRLCHLLVHVEAppgpspepssqplsknskgqdgsptpaptp 1180 ...........................aetdpkdyVeeLLelhdkydslv ++++ ++ ++ + +++ ++ a++ + d+V + ++l+ +++s mKIAA0708 1181 vcpstslrnltqcwlsvvqgqvsrflaAAWRASDFVPRYCSLYQRLQSAG 1230 neaFnnDplFlnaLdkAfesfiNsnvvtkaskspELLAkYcDdlLKKgs. +e F+ + F+ aL++ f + + ++++++a++ +E++A+++D+++++g+ mKIAA0708 1231 SELFGPRAAFTLALRSGFSGALLQQSFLTAAHISEQFARHIDQQIHGGLl 1280 ...KgleeeeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkSas ++ g+ + +++ + i++++ +e ++Fe+fY++++A+RLL+ S + mKIAA0708 1281 ggaAGVGMLGRLQRHLEPIMVLSGLELATTFEHFYQHYMADRLLSLGSSW 1330 LddaEkrmiekLKqvecGyefTsKLegMfkDislSkelnnsFknhlennn L++a +++i+ +++ ++ ++ M++ + +S+el+ +F+ ++ +++ mKIAA0708 1331 LEGAVLEQIGPCFP-------NRLPQLMLQSLHTSEELQHRFHLFQLQQL 1373 dnldlkledeeneE.......................gidlsvkvLstgf d ++l+ ++++eE ++++ ++++++++++++ +++g+ +sv+vLs+ + mKIAA0708 1374 DRQLLE--QGDQEEwrpekveeddegqetgrelftdpGPAISVLVLSPRC 1421 WPtlp.epsinfnLPe.....elekalerFeefYlkkhsgp..d....Rk WP +p ++ ++ P+++ + el++alerF++fY+++++ p d +++R+ mKIAA0708 1422 WPVSPlCY---LHHPRkhlqaELCDALERFSSFYSHSQNCPvlDigphRR 1468 LtWlhsLGkgelkaefndgtkskyeltVstyQmavLLLFNdkeeltyeel L+W++ LG++el++ f N++ee+++e+l mKIAA0708 1469 LQWTW-LGRAELQLGF-----------------------NQSEEVSVETL 1494 qeatqipedeLrrtLqsLlkakvllllllryetpgekspkdkeispntkf + ++++++L ++L +L++ ++l + +++++++++ + mKIAA0708 1495 LRNSDLSPELLHQALLPLTSDNGPL-----------TLEETQDYPQGGVL 1533 slNenft<-* +l e+ + mKIAA0708 1534 RLREPRS 1540 IBR: domain 1 of 2, from 1842 to 1905: score 74.9, E = 1.7e-18 *->eKYerlllesyvesnkdlkwCPa.pdCsyivrvtdlssgskeepssr +KYe++ll+ yves+++l+wC ++++C++i+ ++ + + mKIAA0708 1842 SKYEKALLRGYVESCSNLTWCTNpQGCDRIL-CR--------QGLGS 1879 rveCskGCgfeFCfnCke.ewHgplsC<-* +Csk Cg++ Cf+C ++e+H+p+sC mKIAA0708 1880 GTTCSK-CGWASCFSCSFpEAHYPASC 1905 IBR: domain 2 of 2, from 1927 to 1981: score -2.2, E = 0.2 *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr +K+ +l + ++s C++++ ++ ++ mKIAA0708 1927 SKHLAKLISKRCPS-----------CQAPIEKN---------EGCLH 1953 veCskGCgfeFCfnCkeew...Hgpl.sC<-* +C + C++ FC++C+ +w+++H + +C mKIAA0708 1954 MTCAR-CNHGFCWRCLKSWkpsHKDYyNC 1981 //