hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj19350/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0706  ( 1120 res)   mfj19350

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
KISc     Kinesin motor, catalytic domain. ATPase.       595.9   1.4e-174   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KISc       1/1      11   364 ..     1   404 []   595.9 1.4e-174

Alignments of top-scoring domains:
KISc: domain 1 of 1, from 11 to 364: score 595.9, E = 1.4e-174
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv....tvtvn...
                        +++VavRv   RP+n rE+s      +++vv++++++t ++n+++
   mKIAA0706    11    GASVKVAVRV---RPFNARETSQD----AKCVVSMqgntTSIINpkq 50   

                   .......FtFDkVFW......rydvddpsasQedVFeevaaPLvdsaldG
                   +++ +++FtFD+++W++++ +     +++asQ++V+++++ +++ +a++G
   mKIAA0706    51 skdapksFTFDYSYWshtsveD----PQFASQQQVYRDIGEEMLLHAFEG 96   

                   YNvaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRale
                   YNv +IFAYGQTG+GK+yTM+G                p ++Gi P  +e
   mKIAA0706    97 YNV-CIFAYGQTGAGKSYTMMGRQ-------------EPGQQGIVPQLCE 132  

                   dlFekide.......fsVkvSylEIYNEkirDLLspspenSksrGkhakq
                   dlF +++ +++ + ++sV+vSy+EIY+E++rDLL+p++            
   mKIAA0706   133 DLFSRVNVnqsaqlsYSVEVSYMEIYCERVRDLLNPKS------------ 170  

                   sskkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlel
                     ++ Lr+rE++                 g+yV++L+   V+S++++ +l
   mKIAA0706   171 --RGSLRVREHPI---------------LGPYVQDLSKLAVTSYADIADL 203  

                   lerGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesstne
                   ++ Gnk RtvaaT+mNe SSRSHa+Fti+ +q+           ++ +  
   mKIAA0706   204 MDCGNKARTVAATNMNETSSRSHAVFTIVFTQR-----------SHDQLT 242  

                   gteqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVI
                   g ++ k+sk++LVDLAGSERa+++g  a+G RLkE++nINkSL++LG+VI
   mKIAA0706   243 GLDSEKVSKISLVDLAGSERADSSG--ARGMRLKEGANINKSLTTLGKVI 290  

                   nALaddshdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMI
                   +ALad          ++++++ks +IPYRDS+LT+LL++ LGGNs+T+MI
   mKIAA0706   291 SALAD----------LQSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMI 330  

                   anvSPsssnyeETlsTLrFAsRaksIknkpavne<-*
                   a +SP+++nyeETlsTLr+A+R k+I++++++ne   
   mKIAA0706   331 AALSPADINYEETLSTLRYADRTKQIRCNAVINE    364  

//