hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj19350/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0706  ( 1120 res)   mfj19350

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Kinesin  Kinesin motor domain                           577.8   6.8e-170   1
FHA      FHA domain                                      43.7    4.1e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Kinesin    1/1      19   357 ..     1   424 []   577.8 6.8e-170
FHA        1/1     531   598 ..     1    94 []    43.7  4.1e-09

Alignments of top-scoring domains:
Kinesin: domain 1 of 1, from 19 to 357: score 577.8, E = 6.8e-170
                   *->RvRPlnerEksrgs.vvvnv..sedvessrltn.gkkktFtFDkVFd
                      RvRP+n+rE+s ++++vv++++  + +++++++++ +k+FtFD+ ++
   mKIAA0706    19    RVRPFNARETSQDAkCVVSMqgNTTSIINPKQSkDAPKSFTFDYSYW 65   

                   peatQegsse.p.YAsqefvyesvakPlvesvleGyNgtiFAYGQTGSGK
                   ++++     e+p++Asq++vy++++++++ +++eGyN++iFAYGQTG+GK
   mKIAA0706    66 SHTS----VEdPqFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGK 111  

                   TYTMeGppesdkesgnptddsytlpeeepGiiPRaledlFerieerkerk
                   +YTM+G  e                + + Gi P  +edlF+r++ ++   
   mKIAA0706   112 SYTMMGRQE----------------PGQQGIVPQLCEDLFSRVNVNQSA- 144  

                   pvfKPklnekgwellnsqetligvsfdrglssdlyvndlefsvkvSylEI
                                                        +l++sv+vSy+EI
   mKIAA0706   145 -------------------------------------QLSYSVEVSYMEI 157  

                   YNEkirDLLspsppqrgspskanekkkkkpLrireDpkrGgkmdgvyVeG
                   Y+E++rDLL+p+             ++ + Lr+re+p  G     +yV++
   mKIAA0706   158 YCERVRDLLNPK-------------SRGS-LRVREHPILG-----PYVQD 188  

                   LteveVssaeevlelLelGnknRtvasTkmNerSSRSHaiFtitveqrnt
                   L+   V+s+ ++  l++ Gnk Rtva+T+mNe+SSRSHa+Fti  +qr +
   mKIAA0706   189 LSKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRSH 238  

                   dstgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEa
                   d+ ++   +         +vsk++LVDLAGSERa+ +g   A g+RLkE+
   mKIAA0706   239 DQLTGLDSE---------KVSKISLVDLAGSERADSSG---ARGMRLKEG 276  

                   anINkSLsaLGnVInALadkq....kssHiPYRDSKLTrLLqDSLGGGDN
                   anINkSL++LG+VI+ALad q++++ks++iPYRDS+LT+LL++ LGG  N
   mKIAA0706   277 ANINKSLTTLGKVISALADLQskkrKSDFIPYRDSVLTWLLKENLGG--N 324  

                   sKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   s+T+MIa  SP++     nyeETLsTLr+A+R K+I+   
   mKIAA0706   325 SRTAMIAALSPADI----NYEETLSTLRYADRTKQIR    357  

FHA: domain 1 of 1, from 531 to 598: score 43.7, E = 4.1e-09
                   *->vtiGRdsdsddilldddqdislsg.siSrrHatieykdggvslelaf
                      +++G            d di l g++i  +H++++  ++ ++  +  
   mKIAA0706   531    TRVGQ----------VDVDIKLTGqFIREQHCLFRSIPQPDGEVMV- 566  

                   rlaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             +l++++++     t+vNgk +  +e  +LksG++i +G  
   mKIAA0706   567 ----------TLEPCEGAE----TYVNGKLV--TELLVLKSGNRIVMG   598  

                   *
                    
   mKIAA0706     -   -    

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