hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg11653/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0704  ( 824 res)   mbg11653

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Oxysterol_BP Oxysterol-binding protein                   92.7    7.4e-24   1
PH           PH domain                                   41.0    2.7e-08   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PH             1/1      83   177 ..     1    92 []    41.0  2.7e-08
Oxysterol_BP   1/1     517   824 .]     1   440 []    92.7  7.4e-24

Alignments of top-scoring domains:
PH: domain 1 of 1, from 83 to 177: score 41.0, E = 2.7e-08
                   *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkkkkpkgsipLs
                      ++ +G+Llkk +  +k+w+kR+f+L  + L y k+     +    L 
   mKIAA0704    83    PVQKGFLLKKRkwPLKGWHKRFFCLEKGILKYAKSQ--ADIEREKLH 127  

                   gi.qvekvpdn..krkncFeirt.dretlllqaeseeerkeWvkaiqsai
                   g+  v   + + +k   c+ + t+++  ++l+ +see  +eWv+ ++ + 
   mKIAA0704   128 GCiDVGLSVMSvkKSSKCIDLDTeEH-IYHLKVKSEELFDEWVSKLRHHR 176  

                   r<-*
                       
   mKIAA0704   177 M    177  

Oxysterol_BP: domain 1 of 1, from 517 to 824: score 92.7, E = 7.4e-24
                   *->kSqhsSsssltsklkfilsepkdltrR...ldipeeslspisLwsis
                      +++   ++     +    s++  +++R+++l +p  + s++sLwsi+
   mKIAA0704   517    NLSNDLDNERQTLGPVLESSGEARSKRrtsLPAPGPNTSSVSLWSIL 563  

                   qlwvGkdLskitlPvfinEpkSmLqrvtedleYpelLdkAaaredsltrW
                   ++++GkdLsk ++Pv  nEp+  Lqr+ e+leY+elLdkA   + +l+r 
   mKIAA0704   564 RNNIGKDLSKVAMPVELNEPLNTLQRLCEELEYSELLDKASRIPSPLER- 612  

                   flyvaastlssysettrrv.kKPlNPlLGEtFelkrendElpnkgqyrll
                   ++yvaa+  s y+++ +r ++KP+NP+LGEt e +r++    +   + ++
   mKIAA0704   613 MVYVAAFAISAYASSYFRAgSKPFNPVLGETYECIRQD---KG---FQFF 656  

                   sEQVSHHPPvsAffaespkskwrvqgevqikskFlGkslavmkeGltvht
                   +EQ            +  k+            kF+Gks+++++ G+  h+
   mKIAA0704   657 AEQ------------MRWKN------------KFWGKSMEIVPIGT-THV 681  

                   ildikdingkpEtYtwtqPnttveGILvGkpfvElSGdesvinsstGdkc
                    l++ +      +++w +++  +++IL G +++E  G++++ n    d c
   mKIAA0704   682 TLPAFG-----DHFEWNKVTSCIHNILSGQRWIEHYGEIDIKNLND-DSC 725  

                   v..IeFktkGyfSGkkdsfkgrivkdpdgnkdKEkklytlsGkWndsmyi
                   + +  F ++ y S  + +++g+++ d +g     k+   l GkW +s+y+
   mKIAA0704   726 HckVNFIKAKYWSTNAHEIEGTVF-DRSG-----KAVHRLFGKWHESIYC 769  

                   kKvqsksegelflDahktphealkvrpLeeqhelesrkaWkkvadalkvg
                     + s             ++    v           ++a  +  + +  +
   mKIAA0704   770 GGASS-------------STC---V-----------WRANPMPKGYEQYY 792  

                   nltvftktkneleerqRpllkptesrgvedqralfkrledkedldkeekk
                   ++t f++++ne ++  R ll+pt+ r ++dqr                  
   mKIAA0704   793 GFTQFALELNEMDPLSRSLLPPTDTRFRPDQR------------------ 824  

                   ekpeaddkerkqkgslyepkwfvpsgqpvtdKeklyikarkeyWefrKk<
                                                                     
   mKIAA0704     - -------------------------------------------------  -    

                   -*
                     
   mKIAA0704     -    -    

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