hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16185/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0700  ( 1101 res)   mbg16185

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
HDAC_interact Histone deacetylase (HDAC) interacting    227.2    2.3e-64   1
PAH           Paired amphipathic helix repeat           154.4    1.9e-42   3

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PAH             1/3      55   101 ..     1    47 []    67.0    4e-16
PAH             2/3     175   231 ..     1    47 []    52.5  9.4e-12
PAH             3/3     315   361 ..     1    47 []    37.0  4.3e-07
HDAC_interact   1/1     387   487 ..     1   102 []   227.2  2.3e-64

Alignments of top-scoring domains:
PAH: domain 1 of 3, from 55 to 101: score 67.0, E = 4e-16
                   *->pekYksFlkiLnmykkkridkdeliarvseLlkdhpdLlegFsaFlp
                      p++Y+ Fl+i++++k++ id +++i+rvs+L+ +hpdL+ gF+aFlp
   mKIAA0700    55    PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLP 101  

                   <-*
                      
   mKIAA0700     -     -    

PAH: domain 2 of 3, from 175 to 231: score 52.5, E = 9.4e-12
                   *->pekYksFlkiLnmykkkridkd..........eliarvseLlkdhpd
                      pe+Y+sFl+iL+ y+k++   ++++ ++ +++e++++v+ L+++ +d
   mKIAA0700   175    PEIYRSFLEILHTYQKEQLHTKgrpfrgmseeEVFTEVANLFRGQED 221  

                   LlegFsaFlp<-*
                   Ll +F +Flp   
   mKIAA0700   222 LLSEFGQFLP    231  

PAH: domain 3 of 3, from 315 to 361: score 37.0, E = 4.3e-07
                   *->pekYksFlkiLnmykkkridkdeliarvseLlkdhpdLlegFsaFlp
                       e+Y+ Fl+++ ++++++++ +el++ vs++l+  p+L+  F+ Fl 
   mKIAA0700   315    QEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFLG 361  

                   <-*
                      
   mKIAA0700     -     -    

HDAC_interact: domain 1 of 1, from 387 to 487: score 227.2, E = 2.3e-64
                   *->nCkrcgpSYRlLPkseplppCSgRddlcweVLNDhWVSvPTwaSEDs
                      +Ckr+g+SYR+LPk++++p+CSgR+++c+eVLND+WVS+P+w+ EDs
   mKIAA0700   387    SCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWS-EDS 432  

                   gFvhhRKNQYEEsLfrcEDERfElDrvlEsnsstIkvLeellekinnmsl
                   +Fv+++K++YEE+L+rcEDERfElD+vlE+n++tI+vLe++++k+++m +
   mKIAA0700   433 TFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAP 482  

                   eeksk<-*
                   e+++k   
   mKIAA0700   483 EDQEK    487  

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