hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09368/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0698  ( 1169 res)   mpm09368

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Cu-oxidase_2 Multicopper oxidase                         57.3    3.4e-13   1
Cu-oxidase   Multicopper oxidase                         -9.7     0.0081   1
Cu-oxidase_3 Multicopper oxidase                         -9.7    0.00057   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Cu-oxidase     1/1     242   379 ..     1   187 []    -9.7   0.0081
Cu-oxidase_3   1/1     809   918 ..     1   124 []    -9.7  0.00057
Cu-oxidase_2   1/1     961  1077 ..     1   151 []    57.3  3.4e-13

Alignments of top-scoring domains:
Cu-oxidase: domain 1 of 1, from 242 to 379: score -9.7, E = 0.0081
                   *->edtvitLsDWY.hkdakelek.llasgklptgwvn.mrppvpdavLI
                      ++++     W+ ++++ + + +  +  k   ++++++r+     + I
   mKIAA0698   242    FSVIDENLSWHlDDNIATYCSdPASVDKEDGAFQDsNRM-----HAI 283  

                   NGkggflgncapkdvndslpCllkgavgadlavltvepGKtYRlRiihNv
                   NG   f+                     ++l++l++++ K + +++ +++
   mKIAA0698   284 NG---FV--------------------FGNLPELSMCAQKHVAWHLFGMG 310  

                   glddslnFsIdGHkmTVVEvGDVWDGvyvkaPftvdsldIfvGQrysVlv
                      d ++ +++G  + +        G++++        +If+++  ++ +
   mKIAA0698   311 NEIDVHTAFFHGQMLSI-------RGHHTD------VANIFPATFVTAEM 347  

                   tAknqpvgnYwivanPnmgssyrfg.ipafdngtttaiLrYsga<-*
                      +  +g++ i++            + + + g+++ +++ s++   
   mKIAA0698   348 VP-QK-SGTWLISC----------EvNSHLRSGMQAFYKVDSCS    379  

Cu-oxidase_3: domain 1 of 1, from 809 to 918: score -9.7, E = 0.00057
                   *->tvtegtvtplggterpvitvNGqfPGPtIrvreGDtvvvnVtNnLkd
                        ++g+  +lg            ++GP Ir   GD ++v ++N+  +
   mKIAA0698   809    RPRSGPEEHLG------------ILGPLIRGEVGDILTVVFKNKA-S 842  

                   enttiHWHGlrqpgtpwmDGvpGvTqCPIpPGesftYrFtvtqqaG....
                    + +iH HG+   +t       G++q   +PGe  tY++++++ +G++++
   mKIAA0698   843 RPYSIHAHGVLESNT-------GGPQAA-EPGEVLTYQWNIPERSGpgps 884  

                   .....TyWYHsHsswlrAQqayaGlyGaliIrppas<-*
                   ++   +  Y s ++    + +y Gl+G+l+I        
   mKIAA0698   885 dsacvSWIYYSAVDPI--KDMYSGLVGPLVICRNGI    918  

Cu-oxidase_2: domain 1 of 1, from 961 to 1077: score 57.3, E = 3.4e-13
                   *->dtppkpptllqitgmrydwsigngdtsigingfdndmnrpdnnpplg
                      ++++k +t l                         +  ++ n+ ++ 
   mKIAA0698   961    HVNLKDATFLES-----------------------NKMHAINGKLYA 984  

                   gtnvitlpngdrveivlqNndtg.lpHPfHLHGhdFqVlgrgggnwdpky
                   + + +t+ +g+rv +++  ++++++ H+ H+H  +F        +     
   mKIAA0698   985 NLRGLTVYQGERVAWYMLAMGQDtDIHTVHFHAESFLYQNGQSYR----- 1029 

                   nlvnPprRDTvqvppggwvairFkaDNPGvWlfHCHilrwHldqGmamvf
                           D+v++ pg   +++++a NPG Wl+HCH+   H+ +Gm + f
   mKIAA0698  1030 -------ADVVDLFPGTFEVVEMVASNPGTWLMHCHVT-DHVHAGMETIF 1071 

                   vvdp.s<-*
                    v  ++   
   mKIAA0698  1072 TVLShE    1077 

//