hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0697  ( 1119 res)   mpm11062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
KH       K homology RNA-binding domain                   62.6      5e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KH         1/1     236   306 ..     1    63 []    62.6    5e-14

Alignments of top-scoring domains:
KH: domain 1 of 1, from 236 to 306: score 62.6, E = 5e-14
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg......e
                      + v+ +v++p+  + r+IG+gG +I++i+e tg++Idi++ ++++++
   mKIAA0697   236    EvVRKKVsVPSTVISRVIGRGGCNINAIRECTGAHIDIDKqkdktgD 282  

                   rtvtItGppenvekAkelileile<-*
                   r++tI+G  e  ++A +li ++++   
   mKIAA0697   283 RIITIRGGTESTRQATQLINALIK    306  

//