hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11062/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0697  ( 1119 res)   mpm11062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
KH_1     KH domain                                       64.9    1.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KH_1       1/1     239   301 ..     1    73 []    64.9  1.7e-15

Alignments of top-scoring domains:
KH_1: domain 1 of 1, from 239 to 301: score 64.9, E = 1.7e-15
                   *->tirilipsskvgriIGkgGstIkeIreetGakIdipddgesknlped
                        ++++ps  + r+IG+gG +I++Ire tGa+Idi+++         
   mKIAA0697   239    RKKVSVPSTVISRVIGRGGCNINAIRECTGAHIDIDKQK-------- 277  

                   plngsgertvtIsGtpeavekAkkli<-*
                   +   +g+r++tI+G +e+ ++A +li   
   mKIAA0697   278 D--KTGDRIITIRGGTESTRQATQLI    301  

//