hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00867/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0696  ( 555 res)   mbh00867

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   231.9    5.3e-65   7
FBOX     A Receptor for Ubiquitination Targets           35.2      9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FBOX       1/1     141   180 ..     1    41 []    35.2    9e-06
WD40       1/7     242   279 ..     1    46 []    24.8    0.012
WD40       2/7     282   319 ..     1    46 []    45.6  6.6e-09
WD40       3/7     322   359 ..     1    46 []    34.6  1.4e-05
WD40       4/7     365   402 ..     1    46 []    37.6  1.7e-06
WD40       5/7     405   442 ..     1    46 []    38.9    7e-07
WD40       6/7     445   482 ..     1    46 []    37.8  1.5e-06
WD40       7/7     494   531 ..     1    46 []    29.6  0.00042

Alignments of top-scoring domains:
FBOX: domain 1 of 1, from 141 to 180: score 35.2, E = 9e-06
                   *->LPieileeIlskLdpkdllrlrkVsrkwrslidshdfwfkr<-*
                      L  +i e+Ils+Ld+++l+++ +V++ w ++i++  +w+k+   
   mKIAA0696   141    LD-HIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKL    180  

WD40: domain 1 of 7, from 242 to 279: score 24.8, E = 0.012
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + ++  +  ++  +V+++++++d         ++sg +D++i++W
   mKIAA0696   242    NlQRIQCRSENSK--GVYCLQYDDD--------KIISGLrDNSIKIW 278  

                   d<-*
                   d   
   mKIAA0696   279 D    279  

WD40: domain 2 of 7, from 282 to 319: score 45.6, E = 6.6e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++l++l+gHtg  +V++++++          ++++gs+D+t+r+W
   mKIAA0696   282    SlECLKVLTGHTG--SVLCLQYDER--------VIVTGSsDSTVRVW 318  

                   d<-*
                   d   
   mKIAA0696   319 D    319  

WD40: domain 3 of 7, from 322 to 359: score 34.6, E = 1.4e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+++l tl  H+   +V++++fs          l++++s+D++i +W
   mKIAA0696   322    TgEVLNTLIHHNE--AVLHLRFSNG--------LMVTCSkDRSIAVW 358  

                   d<-*
                   d   
   mKIAA0696   359 D    359  

WD40: domain 4 of 7, from 365 to 402: score 37.6, E = 1.7e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +l r+l gH++  +V+ v+f++         +++s+s+D+ti++W
   mKIAA0696   365    DiTLRRVLVGHRA--AVNVVDFDDK--------YIVSASgDRTIKVW 401  

                   d<-*
                   +   
   mKIAA0696   402 S    402  

WD40: domain 5 of 7, from 405 to 442: score 38.9, E = 7e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t + +rtl+gH+   ++ ++++ +         l++sgs+D+tirlW
   mKIAA0696   405    TcEFVRTLNGHKR--GIACLQYRDR--------LVVSGSsDNTIRLW 441  

                   d<-*
                   d   
   mKIAA0696   442 D    442  

WD40: domain 6 of 7, from 445 to 482: score 37.8, E = 1.5e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + +lr+l+gH+    V++++f+          +++sg  Dg+i++W
   mKIAA0696   445    CgACLRVLEGHEE--LVRCIRFDNK--------RIVSGAyDGKIKVW 481  

                   d<-*
                   d   
   mKIAA0696   482 D    482  

WD40: domain 7 of 7, from 494 to 531: score 29.6, E = 0.00042
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +lrtl  H+g  +V  ++f+          +++s+s+D ti +W
   mKIAA0696   494    StLCLRTLVEHSG--RVFRLQFDEF--------QIISSShDDTILIW 530  

                   d<-*
                   d   
   mKIAA0696   531 D    531  

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