hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00867/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0696  ( 555 res)   mbh00867

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       246.8      3e-70   7
F-box    F-box domain                                    34.4    2.6e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
F-box      1/1     133   182 ..     1    44 []    34.4  2.6e-06
WD40       1/7     244   279 ..     1    38 []    27.8  0.00026
WD40       2/7     284   319 ..     1    38 []    46.8  4.9e-10
WD40       3/7     324   359 ..     1    38 []    32.3  1.1e-05
WD40       4/7     367   402 ..     1    38 []    40.2  4.8e-08
WD40       5/7     407   442 ..     1    38 []    38.6  1.4e-07
WD40       6/7     447   482 ..     1    38 []    45.4  1.3e-09
WD40       7/7     496   531 ..     1    38 []    30.7  3.3e-05

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 133 to 182: score 34.4, E = 2.6e-06
                   *->lldLPde....llleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.
                      +  LP+ + +++ ++Ils+Ld+++l+++ lV+k w+++++   lw++
   mKIAA0696   133    ITALPEQgldhIAENILSYLDARSLCAAELVCKEWQRVISEGmLWKk 179  

                   kll<-*
                    +    
   mKIAA0696   180 LIE    182  

WD40: domain 1 of 7, from 244 to 279: score 27.8, E = 0.00026
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++  +  +++V+c+ ++ d    ++sg rD++ikiWd   
   mKIAA0696   244    QRIQCRsENSKGVYCLQYDDD---KIISGLRDNSIKIWD    279  

WD40: domain 2 of 7, from 284 to 319: score 46.8, E = 4.9e-10
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ecl+vl+gHt++V c+ ++     ++++gS+D t+++Wd   
   mKIAA0696   284    ECLKVLtGHTGSVLCLQYDER---VIVTGSSDSTVRVWD    319  

WD40: domain 3 of 7, from 324 to 359: score 32.3, E = 1.1e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e+l +l +H+ +V  ++fs     l++++S D++i +Wd   
   mKIAA0696   324    EVLNTLiHHNEAVLHLRFSNG---LMVTCSKDRSIAVWD    359  

WD40: domain 4 of 7, from 367 to 402: score 40.2, E = 4.8e-08
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ +vl gH ++V+ v+f+     +++s+S D+tik+W+   
   mKIAA0696   367    TLRRVLvGHRAAVNVVDFDDK---YIVSASGDRTIKVWS    402  

WD40: domain 5 of 7, from 407 to 442: score 38.6, E = 1.4e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e +++l+gH+ ++ c+ +      l++sgS+D+ti++Wd   
   mKIAA0696   407    EFVRTLnGHKRGIACLQYRDR---LVVSGSSDNTIRLWD    442  

WD40: domain 6 of 7, from 447 to 482: score 45.4, E = 1.3e-09
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       cl+vl+gH+  V+c++f+     +++sg  Dg+ik+Wd   
   mKIAA0696   447    ACLRVLeGHEELVRCIRFDNK---RIVSGAYDGKIKVWD    482  

WD40: domain 7 of 7, from 496 to 531: score 30.7, E = 3.3e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       cl++l  H++ V  + f+     +++s+S+D ti iWd   
   mKIAA0696   496    LCLRTLvEHSGRVFRLQFDEF---QIISSSHDDTILIWD    531  

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