hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01635/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0695 ( 738 res) mbg01635 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Cullin Cullin family 712.0 2.8e-210 1 Uso1_p115_head Uso1 / p115 like vesicle tethering pro -135.7 0.9 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Uso1_p115_head 1/1 168 437 .. 1 379 [] -135.7 0.9 Cullin 1/1 71 640 .. 1 656 [] 712.0 2.8e-210 Alignments of top-scoring domains: Uso1_p115_head: domain 1 of 1, from 168 to 437: score -135.7, E = 0.9 *->GNarnQeeFakivLDnGEdVnAPSppprPalnvnstssfGdiKvidV +++Q++ + D G + +r + s + + mKIAA0695 168 --YVLQNSMLPSIWDMGLEL------FRAHI-----ISDQKVQTKTI 201 vvvLiDLmsmvNekqpfdLRcAVlycLkaylydNeelqrkflktllpsyk +++L ++ e+ + + l+ L++ l+d + q f ++ l+ mKIAA0695 202 DGIL---LLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQQFLQE-- 246 ntStdevgNrstlstGqlllqgESDslsstDsydnWFYEGSFKANLFEVL t+ + + ++ l E ++ + mKIAA0695 247 ---TNRL---YAAEGQKLMQEREVPEYLHHVNKRLEE------------- 277 LNYDAELNLNPFKLFFtaviLmHllqendtlKelLlrVtLavttdnDeeg a+ L l + t+K l +V + g mKIAA0695 278 ----------------EADRLITYL-DQTTQKSLIASVE-KQLL-----G 304 esEepvTliQtVctlLlatsqgnadlQtrvGyLMLLitWLfgcpdAVkDF e +T+i + L +++ ++++Q L LL + + + V + mKIAA0695 305 E---HLTAILQ--KGLN-SLLDENRIQD----LSLLYQLFSRVRGGVQVL 344 Lse.ssnlqyLltalvdnsgeasEsEqqdvvvqGLvAmvLLGvvyeFssk L + ++ + + +v n+ + vq L + k mKIAA0695 345 LQQwIEYIKAFGSTIVINPEK----DKT--MVQELLDF-----------K 377 eLsPvpRsdveelI.tkrvGkdnfiskLkrlsrhelysiralqkqqlill + +v I+t ++ + fi++ k e+++ +++ k mKIAA0695 378 D-------KVDHIIdTCFLKNEKFINAMK-----EAFE-TFINKRP---- 410 kelreesaeLPklyLDfeFv..kLfkelegrIakav<-* + + ae L +v++kL +++++ + + mKIAA0695 411 ---NKP-AE-----LIAKYVdsKLRAGNKEATDEEL 437 Cullin: domain 1 of 1, from 71 to 640: score 712.0, E = 2.8e-210 *->WekLrdaidqiltnlknvsplsyeeLYtaVYniCtstsavphklgek W kL++a+++i+ + + +eeLY+aV n+ + hk ++ mKIAA0695 71 WQKLKEAVEAIQ--NSTSIKYNLEELYQAVENL------CSHKISAN 109 LYnrLkeyleeyvka.lrkslleisddenlLkeyikeWkdfstsmkmind LY++L++++e+++ka++++ +++ d +Lk++ ++W++++++m mi+ mKIAA0695 110 LYKQLRQICEDHIKAqIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRS 159 ifmYLdRyyvkrnidgkkevyeiyeLgLdiWreelfdn..ikdrlidalL if LdR+yv +n +++i+++gL+++r ++ ++++ ++id++L mKIAA0695 160 IFLFLDRTYVLQN----SMLPSIWDMGLELFRAHIISDqkVQTKTIDGIL 205 dlIekeRkGeaidr.liknvvdmlvsLgldekDmkkqklkvYkedFEkpF lIe+eR+Geaidr+l++++++ml l++Y+++FE +F mKIAA0695 206 LLIERERNGEAIDRsLLRSLLSMLS------------DLQIYQDSFEQQF 243 LeaTseFYkkEsskfLqensvseYlkkvEkrLeeEeeRvrlYLhsstekk L +T++ Y++E++k++qe +v+eYl +v krLeeE +R+ YL+ t k mKIAA0695 244 LQETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKS 293 lievvekvLIekHlefLlmehsefq.LldnnkleDLrrMYrLlsRvpnGL li+ vek+L+ +Hl+ + +++++ +Lld+n+++DL+++Y+L+sRv +G+ mKIAA0695 294 LIASVEKQLLGEHLTAI--LQKGLNsLLDENRIQDLSLLYQLFSRVRGGV 341 eplrkilekhvkkeGlalvsklaaetdpkdyVeeLLelhdkydslvneaF + l++ +++k+ G +v + ++++k++V+eLL+++dk d+++ ++F mKIAA0695 342 QVLLQQWIEYIKAFGSTIVIN---PEKDKTMVQELLDFKDKVDHIIDTCF 388 nnDplFlnaLdkAfesfiNsnvvtkaskspELLAkYcDdlLKKgsKglee ++++F na+++Afe+fiN++ +k++EL+AkY+D++L+ g+K +++ mKIAA0695 389 LKNEKFINAMKEAFETFINKRP----NKPAELIAKYVDSKLRAGNKEATD 434 eeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkSasLddaEkrm eele++ldki+++f++i +KDvFe+fY+k+LAkRLL gkSas +daEk+m mKIAA0695 435 EELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSAS-VDAEKSM 483 iekLKqvecGyefTsKLegMfkDislSkelnnsFknhlennndnldlkle ++kLK ++ +n+++ mKIAA0695 484 LSKLKH----------------------------YMQNQNVPG------- 498 deeneEgidlsvkvLstgfWPtlp.epsinfnLPeelekalerFeefYlk +i+l+v++L+ g+WPt+ +++ ++LP+e++k++e+F+ fYl mKIAA0695 499 ------NIELTVNILTMGYWPTYVpME---VHLPPEMVKLQEIFKTFYLG 539 khsgpdRkLtWlhsLGkgelkaefndgtkskyeltVstyQmavLLLFNdk khsg RkL+W+ LG+++lkaef+ g+ +el+Vs++Q vLL FN+ mKIAA0695 540 KHSG--RKLQWQSTLGHCVLKAEFKEGK---KELQVSLFQTMVLLMFNEG 584 eeltyeelqeatqipedeLrrtLqsLlkakvllllllryetpgekspkdk ee+++ee++ at+i++ eLrrtLqsL+++k ++l k+pk+k mKIAA0695 585 EEFSLEEIKHATGIEDGELRRTLQSLACGKARVLA---------KNPKGK 625 eispntkfslNenft<-* +i++++kf+ N++f+ mKIAA0695 626 DIEDGDKFICNDDFK 640 //