hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj10262/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0693  ( 407 res)   mfj10262

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SSXT     SSXT protein (N-terminal region)               175.3    9.8e-49   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SSXT       1/1      16    81 ..     1    78 []   175.3  9.8e-49

Alignments of top-scoring domains:
SSXT: domain 1 of 1, from 16 to 81: score 175.3, E = 9.8e-49
                   *->RGkanmqGGGGGGvPqkVnQsTIQKlLDENsrLIqcIqEYqnkGrAd
                      RGk+            +V+Q+TIQK+LDEN++LIqcI++Yq+kG+++
   mKIAA0693    16    RGKG------------EVTQQTIQKMLDENHHLIQCILDYQSKGKTA 50   

                   ECiqYQqvLHRNLvYLAtlADpnlnsqlklp<-*
                   EC+qYQq+LHRNLvYLAt+AD+n+n+q++lp   
   mKIAA0693    51 ECTQYQQILHRNLVYLATIADSNQNMQSLLP    81   

//