hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj03025/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0689  ( 643 res)   mfj03025

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                          111.3    1.1e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/1      28   101 ..     1   121 []   111.3  1.1e-28

Alignments of top-scoring domains:
RRM: domain 1 of 1, from 28 to 101: score 111.3, E = 1.1e-28
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++fVgN+  p+++tee+L+++F              s+ G vvs r+
   mKIAA0689    28    SVFVGNI--PYEATEEQLKDIF--------------SEVGSVVSFRL 58   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v+d++                     TGk+kG++F e+ d+e A  A  +
   mKIAA0689    59 VYDRE---------------------TGKPKGYGFCEYQDQETALSA--M 85   

                   ealnaskGkeledgGrptlglrVe<-*
                   ++ln   G+e+   Gr    lrV+   
   mKIAA0689    86 RNLN---GREF--SGRA---LRVD    101  

//