hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj03025/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0689  ( 643 res)   mfj03025

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or    122.0    1.1e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/1      29   100 ..     1    74 []   122.0  1.1e-32

Alignments of top-scoring domains:
RRM_1: domain 1 of 1, from 29 to 100: score 122.0, E = 1.1e-32
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVgN+p+++tee+Lkd+Fs++G+++s+++v+D  retg++kG++F+
   mKIAA0689    29    VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYD--RETGKPKGYGFC 73   

                   eFedeedAekAldalnGkelggrelrv<-*
                   e++d+e A +A+++lnG+e+ gr lrv   
   mKIAA0689    74 EYQDQETALSAMRNLNGREFSGRALRV    100  

//