hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00872/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0688  ( 893 res)   mbh00872

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                   61.9      8e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/1     579   631 ..     1    66 []    61.9    8e-14

Alignments of top-scoring domains:
TSP1: domain 1 of 1, from 579 to 631: score 61.9, E = 8e-14
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w++W++W++CS +tCGgG     v+  +R      c  p p  +ngg
   mKIAA0688   579    WGPWGPWGDCS-RTCGGG-----VQFSSR-----DCTRPVP--RNGG 612  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C+++++ +r Cnt+    +Cp   
   mKIAA0688   613 KYCEgrrtRFRSCNTE----NCP    631  

//