hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mib/mib39001/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0686 ( 1483 res) mib39001 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Calx-beta Calx-beta domain 42.2 1.2e-08 1 GPS Latrophilin/CL-1-like GPS domain 18.8 0.014 1 7tm_2 7 transmembrane receptor (Secretin family) -66.4 1.4e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Calx-beta 1/1 174 274 .. 1 109 [] 42.2 1.2e-08 GPS 1/1 1030 1080 .. 1 55 [] 18.8 0.014 7tm_2 1/1 1087 1337 .. 1 296 [] -66.4 1.4e-05 Alignments of top-scoring domains: Calx-beta: domain 1 of 1, from 174 to 274: score 42.2, E = 1.2e-08 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr +t++I++ +gv++F+p+ ++ V E+ ++++cV r g + mKIAA0686 174 TTAEIEP---MGVFQFSPSSRNITVSEDAQTIRICVQRLFG---FHG 214 tVt.VsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiDDd ++++Vsy+T G+A+ P D+e++ ++ F+ + e+ + +tii+D mKIAA0686 215 DLIkVSYETTAGSAKP-P-EDFEAVQKGEVFFQRFQ-PEIDFEITIINDQ 261 vyEgdEnFfvrLs<-* E E+F+++L+ mKIAA0686 262 LPEIEETFYINLT 274 GPS: domain 1 of 1, from 1030 to 1080: score 18.8, E = 0.014 *->tnpiCvfWdesslestgvWstdrG.CevveenkpshttCsCnHLTtF ++++C +W+ W +d++ C+vve +++C C+H++ mKIAA0686 1030 HTSRCLLWNQAA----ASWLSDSQfCKVVEDAS-DYVECACSHMSVY 1071 Avlmdvppn<-* Av ++ mKIAA0686 1072 AVYAQTDNS 1080 7tm_2: domain 1 of 1, from 1087 to 1337: score -66.4, E = 1.4e-05 *->lllLkviytVGyslSSLvaLllAiaifllfRkLhCtR.nyIHlNLfa + ++ +i ++S +L++ f++ h+ ++++++++ mKIAA0686 1087 FFSAGLI-----CIS-GLCLAVVSHMFCAR---HSMFaAKLLTHMMV 1124 sfiLralsfLikdavlfnsvglseadqlsweeslhcsasagkitmivvVg + + +++fL+ + + ++s mKIAA0686 1125 ASLGTQILFLASAYASPHLSEES--------------------------- 1147 CkvvavflhYfflaNFfWmLVEGlYLhtllvvtvevffserkrfwwYlli C +va+ hY +l+ F WmL + + lvv+ ++r + ++l+ mKIAA0686 1148 CSAVAAVAHYLYLCQFSWMLIQSVNFWYVLVVS---DEHTERRCLLFCLL 1194 GWGvP.avfvgiwaivrpdkwagygnegCCWlsnedngyfwWi..ikGPv WG+P+ v++ + +i+r + ++ +++ ++ +g + i++i++ mKIAA0686 1195 SWGLPsFVVILLILILRGI--YHRSMPQI--YGL-IHGDLCFIpnIYAAL 1239 llvIlvNfilFinilriLvqKlridkslspqmgetdqyrk....krlaks ++ lv + ++ ++ + ++ + l+pq ++ d +++++ + mKIAA0686 1240 FTAALVPLMCLVVVFVVFIHAYQ----LKPQWKGYDDVFRgrtnAAEIPL 1285 tLlLlPLLGitwvlflfapeddsqGvssivflylfliLnSfQGffVavlY L L+ L +tw+ + + + + +++l+lf i+nS+QG+ V+v Y mKIAA0686 1286 ILYLFALISMTWLWGGLHMAY-----RHFWMLVLFVIFNSLQGLYVFVVY 1330 CFlNgEV<-* l+ mKIAA0686 1331 FILHNQT 1337 //