hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02790/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0684  ( 1186 res)   mbg02790

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
U-box    U-box domain                                   158.0    1.6e-43   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
U-box      1/1    1111  1184 ..     1    81 []   158.0  1.6e-43

Alignments of top-scoring domains:
U-box: domain 1 of 1, from 1111 to 1184: score 158.0, E = 1.6e-43
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEAWGvdpt
                      D+PDEF+DP++++LM+DPV lPSG +++DRs+I+rHLl+     +pt
   mKIAA0684  1111    DAPDEFRDPLMDTLMTDPVRLPSG-TVMDRSIILRHLLN-----SPT 1151 

                   DPftGRepLthdeliPNleLKekIdafleekrea<-*
                   DPf+ R+ Lt+++l P +eLKe+I+a+++ek+ +   
   mKIAA0684  1152 DPFN-RQMLTESMLEPVPELKEQIQAWMREKQSS    1184 

//