hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mzz/mzz00001/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0681  ( 826 res)   mzz00001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                            42.5    5.8e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/1     754   821 ..     1    67 []    42.5  5.8e-08

Alignments of top-scoring domains:
SAM: domain 1 of 1, from 754 to 821: score 42.5, E = 5.8e-08
                   *->vs.wspesVaeWLesigleq.YadnFrkngidgeelllltseedLke
                      vs+w+ e+V  + + +  +++ a  F+++ idge++lllt ++d+ +
   mKIAA0681   754    VSkWTIEEVFGFVQTLTGSEdQARLFKDEMIDGEAFLLLT-QADIVK 799  

                   lGitllGhRkkIlsaiqklkeq<-*
                   ++  +lG+ +kI +ai  +k++   
   mKIAA0681   800 IMSVKLGPALKIYNAILMFKNT    821  

//