hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mzz/mzz00001/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0681  ( 826 res)   mzz00001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MBT      mbt repeat                                     414.7   8.8e-121   3
zf-C2HC  Zinc finger, C2HC type                          63.3      5e-15   1
SAM_1    SAM domain (Sterile alpha motif)                40.7    3.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MBT        1/3     316   389 ..     1    77 []   154.7  1.6e-42
MBT        2/3     423   496 ..     1    77 []   141.3  1.7e-38
MBT        3/3     527   600 ..     1    77 []   128.4  1.3e-34
zf-C2HC    1/1     625   655 ..     1    31 []    63.3    5e-15
SAM_1      1/1     755   819 ..     1    66 []    40.7  3.2e-08

Alignments of top-scoring domains:
MBT: domain 1 of 3, from 316 to 389: score 154.7, E = 1.6e-42
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                      MKLE +Dpq+ps++++ TV+ev+Gyr LrL+fDG+++++  DfW+++
   mKIAA0681   316    MKLEGIDPQHPSMYFILTVAEVCGYR-LRLHFDGYSECH--DFWVNA 359  

                   dSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                   +SpdIhP+GW+ek+gh+Lq P+gy++++fs   
   mKIAA0681   360 NSPDIHPAGWFEKTGHKLQLPKGYKEEEFS    389  

MBT: domain 2 of 3, from 423 to 496: score 141.3, E = 1.7e-38
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                      MKLEAvD++nps++cvA V++v+++r ++++fD+w + y  D+Wc+ 
   mKIAA0681   423    MKLEAVDRMNPSLVCVASVTDVVDSR-FLVHFDDWGDTY--DYWCDP 466  

                   dSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                    Sp+IhPvGWC k+g+pL+PP++y++ ++    
   mKIAA0681   467 SSPYIHPVGWCQKQGKPLTPPQDYPDPDSF    496  

MBT: domain 3 of 3, from 527 to 600: score 128.4, E = 1.3e-34
                   *->MKLEAvDpqnpssicvATVvevlGyrYLrLrfDGwdsdysaDfWchv
                      MKLEAvD++np +i+vA V +v + r ++L+fDGw+  y  DfW ++
   mKIAA0681   527    MKLEAVDRRNPALIRVASVEDVEDHR-IKLHFDGWSHNY--DFWIDA 570  

                   dSpdIhPvGWCeknghpLqPPpgyrskkfs<-*
                   d pdIhP+GWC+k+ghpL+PP++ r+  ++   
   mKIAA0681   571 DHPDIHPAGWCSKTGHPLEPPLRPRESSSV    600  

zf-C2HC: domain 1 of 1, from 625 to 655: score 63.3, E = 5e-15
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      + kCPtpGCdGsGHvtGk+t+H++lsGCPla   
   mKIAA0681   625    HRKCPTPGCDGSGHVTGKFTAHHCLSGCPLA    655  

SAM_1: domain 1 of 1, from 755 to 819: score 40.7, E = 3.2e-08
                   *->dgwsvesVgeWLesigl..lgqYidnFlaagyidgdtllqlteeDLe
                      + w+ e V  + +   l++++  +  F + ++idg+++l+lt+ D++
   mKIAA0681   755    SKWTIEEVFGFVQ--TLtgSEDQARLF-KDEMIDGEAFLLLTQADIV 798  

                   dlGvtllGHrkkIlssIqgLk<-*
                   +++ ++lG+++kI ++I ++k   
   mKIAA0681   799 KIMSVKLGPALKIYNAILMFK    819  

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