hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm03050/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0679 ( 1037 res) mpm03050 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Hyaluronidase_2 Hyaluronidase 598.0 5.6e-176 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Hyaluronidase_2 1/1 183 500 .. 1 340 [] 598.0 5.6e-176 Alignments of top-scoring domains: Hyaluronidase_2: domain 1 of 1, from 183 to 500: score 598.0, E = 5.6e-176 *->RGvvEGFYGtPWShedRkdLikflgdnklNtYiYAPKDDpYhRekWR +GvvEGFYG+PW +e+Rk+L+++l++++lNtY+YAPKDD++hR++WR mKIAA0679 183 CGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWR 229 ELYpeeeLkelkeLvavAaennvdFvYaIsPFlGlDitfssEeldeaDfd E+Y +ee+++l++L+++A+e++++F+YaIsP GlDitfs+ ++++ mKIAA0679 230 EMYSVEEAEQLMTLISAAREYEIEFIYAISP--GLDITFSN----PKEVS 273 tLlaKleQlyslGVrsFaVLfDDIEyTKWNCkaqmsdadksdftsqAqaq tL++Kl+Q++++G+rsFa+LfDDI++ +m++adk++f s+A+aq mKIAA0679 274 TLKRKLDQVSQFGCRSFALLFDDIDH-------NMCAADKEVFSSFAHAQ 316 vqLlNelqteLvsaksdvkelifcPteYyqsmavpnvksseYLkTlgekl v+++Ne++++L++++ +++fcPteY++++++pnv +s+YL+T gekl mKIAA0679 317 VSITNEIYQYLGEPE----TFLFCPTEYCGTFCYPNVSQSPYLRTVGEKL 362 dptIpimWTGprvWvsanitvediqfivtevpgRppliWDNwPvNDykkd p I+++WTGp+v vs++i+ve+i++ v+++++R+p+iWDN+++NDy++ mKIAA0679 363 LPGIEVLWTGPKV-VSKEIPVESIEE-VSKIIKRAPVIWDNIHANDYDQ- 409 kdRLlmGPydgrrdpgLdpslynvsGivsNPMnqaEaskvaiytlAdYaW +RL++GPy+g r+++L+p+ ++G+++NP++++Ea++vai+tlA W mKIAA0679 410 -KRLFLGPYKG-RSTELIPR---LKGVLTNPNCEFEANYVAIHTLAT--W 452 Nsady.......AsadywksWlssiekieggkaeetvatlllnafakhny ++ ++++ +++ +++d ++s s ++k+e++ ++e+++t++l ++ ++ mKIAA0679 453 YKSNMngvrkdvVMTDSEDSTVSIQIKLENEGSDEDIETDVL--YSPQMA 500 <-* mKIAA0679 - - //