hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh00428/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0678  ( 966 res)   mbh00428

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DnaJ     DnaJ domain                                     65.7      1e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DnaJ       1/1      24    88 ..     1    79 []    65.7    1e-15

Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 24 to 88: score 65.7, E = 1e-15
                   *->dyYeiLGvpr...dAsdeeIKKAYRkLAlkyHPDKNpgdpeerktle
                      d Ye+L++p +++  +++ I+KAY +LA kyHPDKNp+         
   mKIAA0678    24    DAYEVLNLPIgqgLHDESKIRKAYFRLAQKYHPDKNPEGR------- 63   

                   raeskeeAeekFkeineAYevLsDpekRaiYDqyg<-*
                            ++F ++n+AYe L+ +   +i D      
   mKIAA0678    64 ---------DMFEKVNKAYEFLCTKST-KIVDGPD    88   

//