hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm07016/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0677  ( 1080 res)   mpm07016

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TUDOR    Tudor domain                                   111.2    1.2e-28   2
JmjN     Small domain found in the jumonji family of     83.7    2.3e-20   1
PHD      PHD zinc finger                                 54.6    1.3e-11   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjN       1/1      29    71 ..     1    45 []    83.7  2.3e-20
PHD        1/2     725   783 ..     1    39 []    28.6  0.00085
PHD        2/2     845   901 ..     1    39 []    33.6  2.6e-05
TUDOR      1/2     913   970 ..     1    60 []    49.6    4e-10
TUDOR      2/2     971  1027 ..     1    60 []    61.9  8.3e-14

Alignments of top-scoring domains:
JmjN: domain 1 of 1, from 29 to 71: score 83.7, E = 2.3e-20
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                      +i++fyPt+eEF+++++YI++I++ +G A+++G +KvVPPk+WkP  
   mKIAA0677    29    RIMTFYPTMEEFRNFSRYIAYIES-QG-AHRAGLAKVVPPKEWKP   71   

                   *
                    
   mKIAA0677     -   -    

PHD: domain 1 of 2, from 725 to 783: score 28.6, E = 0.00085
                   *->yC.vCgk.................g.llqCdkgCdrwyHv.Clgppl
                      +C    + +++ + +++  ++++++ l++C  +C++ +H +C+g p+
   mKIAA0677   725    MCfTTTGcstdinlstpyleedgtSmLVSCK-KCSVRVHAsCYGVPP 770  

                   eepdg.wyCprCk<-*
                      +++w C+rC+   
   mKIAA0677   771 AKASEeWMCSRCS    783  

PHD: domain 2 of 2, from 845 to 901: score 33.6, E = 2.6e-05
                   *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep
                       C +C+k+++++ g ++qC++++C++++Hv+C++ ++   ++++ + 
   mKIAA0677   845    KCvFCKKrrkrnaGcCVQCShGRCPTAFHVsCAQAAGVmmqpddwPF 891  

                   dg.wyCprCk<-*
                        C r+k   
   mKIAA0677   892 VVfITCFRHK    901  

TUDOR: domain 1 of 2, from 913 to 970: score 49.6, E = 4e-10
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                        + +G++v+ +++ +g++Y +++++ ++e ++yeV+f+D  +++++
   mKIAA0677   913    LSITAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFSDNL 957  

                   plsdlrqlpekfa<-*
                   +++d+ + ++ ++   
   mKIAA0677   958 YPEDIVSQDCLQL    970  

TUDOR: domain 2 of 2, from 971 to 1027: score 61.9, E = 8.3e-14
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      +++++G++v++rw+ Dg+ Y A+ ++  +  q+y+V f+D G++ vv
   mKIAA0677   971    GPPAEGEVVQVRWT-DGQVYGAKFVASHPI-QMYQVEFED-GSQLVV 1014 

                   plsdlrqlpekfa<-*
                   +++d+++l+e+++   
   mKIAA0677  1015 KRDDVYTLDEELP    1027 

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