hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm07016/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0677  ( 1080 res)   mpm07016

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                    211.2    1.6e-59   1
JmjN     jmjN domain                                    101.9    1.3e-26   1
PHD      PHD-finger                                      -2.4       0.49   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjN       1/1      29    76 ..     1    55 []   101.9  1.3e-26
JmjC       1/1     191   307 ..     1   126 []   211.2  1.6e-59
PHD        1/2     743   785 ..     1    51 []     7.1    0.061
PHD        2/2     845   903 ..     1    51 []    -3.6     0.63

Alignments of top-scoring domains:
JmjN: domain 1 of 1, from 29 to 76: score 101.9, E = 1.3e-26
                   *->eiPvFyPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLE
                      +i++FyPtmeEF+++ +YIa+I +++gA+++G++KVvPPkeW     
   mKIAA0677    29    RIMTFYPTMEEFRNFSRYIAYI-ESQGAHRAGLAKVVPPKEW----- 69   

                   GkPpcald<-*
                    kP+ ++d   
   mKIAA0677    70 -KPRTSYD    76   

JmjC: domain 1 of 1, from 191 to 307: score 211.2, E = 1.6e-59
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      +ly+Gm++++++wH+ed++lySinylhfg+pk WY++Ppe++ ++e 
   mKIAA0677   191    YLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLE- 236  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     ++++ +  +p++ ++++ ++ lrh++tlisP +  L++ Gip+ +++Q
   mKIAA0677   237 --RLAKGF--FPGS-AQSCEAF-LRHKMTLISPLM--LKKYGIPFDKVTQ 278  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   ++GEf++tfP++yH++fN+Gfn+ae++NF   
   mKIAA0677   279 EAGEFMITFPYGYHAGFNHGFNCAESTNF    307  

PHD: domain 1 of 2, from 743 to 785: score 7.1, E = 0.061
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                            ++d+     l+ C +C + +H++C+g p     +++W C +
   mKIAA0677   743    -----LEEDG--TSMLVSCKKCSVRVHASCYGVPPA-KASEEWMCSR 781  

                   Ctpk<-*
                   C +    
   mKIAA0677   782 CSAN    785  

PHD: domain 2 of 2, from 845 to 903: score -3.6, E = 0.63
                   *->yCsvCgkpdddaggdllqCD..gCdrwfHlaClgppleeppegkW..
                       C++C+k    + g  +qC ++ C+ +fH +C +    ++++++W+ 
   mKIAA0677   845    KCVFCKKRRKRNAGCCVQCShgRCPTAFHVSCAQAAGVMMQPDDWpf 891  

                   ....lCpeCtpk<-*
                       +C + +     
   mKIAA0677   892 vvfiTCFRHKIP    903  

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