hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj02220/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0676  ( 1268 res)   mfj02220

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   206.4    2.5e-57   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     512   725 ..     1   310 []   206.4  2.5e-57

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 512 to 725: score 206.4, E = 2.5e-57
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      v kG+p+slRge+W l+++a+ +                      + 
   mKIAA0676   512    VLKGIPESLRGELWLLFSGAWNE----------------------MV 536  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                   + +++Y +l ++  +k + ++                             
   mKIAA0676   537 THPGYYAELVEKSLGKYSLAT----------------------------- 557  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                     Ie+Dl+R +pe++ Fq++                g+ +LrrvL+aY+ 
   mKIAA0676   558 EEIERDLHRSMPEHPAFQNE---------------LGIAALRRVLTAYAF 592  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   +np   +gYcQ mn ++++LLl+    +Ee+AFw++v+L+er+lp ++  
   mKIAA0676   593 RNPT--IGYCQAMNIVTSVLLLYG---SEEEAFWLLVALCERMLPDYY-- 635  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                              g+  dq  ++ l ++ lP L++++qe+            
   mKIAA0676   636 ------NTRVVGALVDQGIFEELTRDVLPRLSEKMQEL------------ 667  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                       s+ +l+WfLtlF + +P+e ++ i D++f+e    g ++++++ala
   mKIAA0676   668 -GVISSISLSWFLTLFLSVMPFESAVVIVDCFFYE----GIKVILQVALA 712  

                   iLklnedkllkld<-*
                   +L+ n ++ll+++   
   mKIAA0676   713 VLDANVEQLLDCN    725  

//