hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj02220/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0676  ( 1268 res)   mfj02220

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                     241.2    1.5e-68   1
GRAM     GRAM domain                                    199.2    6.4e-56   2
efhand   EF hand                                         26.7    0.00055   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GRAM       1/2     148   215 ..     1    82 []   101.0  2.3e-26
GRAM       2/2     294   362 ..     1    82 []    98.2  1.7e-25
TBC        1/1     512   724 ..     1   219 []   241.2  1.5e-68
efhand     1/1     889   917 ..     1    29 []    26.7  0.00055

Alignments of top-scoring domains:
GRAM: domain 1 of 2, from 148 to 215: score 101.0, E = 2.3e-26
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      +k+rk+F+  +p++EkL+++     y C+++++  ++p+qG+lYlt 
   mKIAA0676   148    LKMRKQFG--MPEGEKLVNY-----YPCTFWKG--RVPRQGWLYLTV 185  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n+lcF+S++lg ++     +lv+ ++d++r+ek+    
   mKIAA0676   186 NHLCFYSFLLGKEV-----SLVVQWVDVTRLEKNA    215  

GRAM: domain 2 of 2, from 294 to 362: score 98.2, E = 1.7e-25
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e++r++F+  lp++E+L+++     + C+l++pf+k++ +G+++++n
   mKIAA0676   294    ECYRATFR--LPKDERLDGH-----TGCTLWTPFNKLHIPGQMFISN 333  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n++cF+S k+ d +      l+iPl++++ vek +   
   mKIAA0676   334 NYICFAS-KEEDAC-----RLIIPLREVTIVEKAD    362  

TBC: domain 1 of 1, from 512 to 724: score 241.2, E = 1.5e-68
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                      v  G p s r++ W++ sgA       +g+Y +l+ +  +k s a +
   mKIAA0676   512    VLKGIPESLRGELWLLFSGAWNEMVTHPGYYAELVEKSLGKYSLATE 558  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                   +Ie+D+ R++++  aFq +    gi  LrrvL+AY  +nP +gYcQ+MN+
   mKIAA0676   559 EIERDLHRSMPEHPAFQNE---LGIAALRRVLTAYAFRNPTIGYCQAMNI 605  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   v + +Ll   SEe+AF++L  L+e  +P  Yy     G + Dq +++   
   mKIAA0676   606 VTSVLLLYG-SEEEAFWLLVALCERMLPD-YYNTRVVGALVDQGIFEELT 653  

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                    + lprL e +  +gv  + +sL wfL+L+   +P e A+ I D +F +G
   mKIAA0676   654 RDVLPRLSEKMQELGV-ISSISLSWFLTLFLSVMPFESAVVIVDCFFYEG 702  

                   ivllfrvaLAvLkilkeqiLda<-*
                   i + ++vaLAvL  + eq+Ld+   
   mKIAA0676   703 IKVILQVALAVLDANVEQLLDC    724  

efhand: domain 1 of 1, from 889 to 917: score 26.7, E = 0.00055
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       + ++F+++D+++D  I+f+Ef+++++ +   
   mKIAA0676   889    LAGRMFRLLDQNKDSLINFKEFVTGMSGM    917  

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