hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg06526/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0674 ( 1043 res) mbg06526 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FKBP_C FKBP-type peptidyl-prolyl cis-trans isomeras 53.0 6.4e-12 1 Filament Intermediate filament protein -190.7 0.71 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FKBP_C 1/1 2 74 .. 1 111 [] 53.0 6.4e-12 Filament 1/1 369 692 .. 1 359 [] -190.7 0.71 Alignments of top-scoring domains: FKBP_C: domain 1 of 1, from 2 to 74: score 53.0, E = 6.4e-12 *->gdgprkpkkGDtVtvhYtGkLedGtvFDsslgydekskkkgrgkPfe G+vFDs+ + ++kP+ mKIAA0674 2 -----------------------GQVFDST--AN-------KDKPLR 16 FtLGsGqVIkGwdeGllgMkvGEkrkltiPpelaYGeqdekGlaggvlpa ++LGsG+V kG+++GllgMk+G+kr ++ P+ a G+ +G+ g++ mKIAA0674 17 LKLGSGKVVKGLEDGLLGMKKGGKRLIITPSACAAGS---EGVIGWT--- 60 IPPnatLvFeVELl<-* P ++ LvFeVE+ mKIAA0674 61 QPTDSILVFEVEVR 74 Filament: domain 1 of 1, from 369 to 692: score -190.7, E = 0.71 *->nEKeqmQnLNDRLAsYIdK.VRfLEqqNkeLevkieelrqkqsrggp + + + ND+ I+++ R Eq N ++e + + l+ ++ mKIAA0674 369 EKSSRIEEQNDKISDLIERnQRYVEQSNLMMEKRNNSLQTATEN--- 412 asvsrlyslYeteieeLRrqidqltner...................... ++r+ ++ e+e + +++ ++t++ ++ + + + +++++++ + + + mKIAA0674 413 -TQARILHA-EQEKAKVTEELAAATAQVshlqlkmtahqkketelqlqlt 460 .............arlqlEidnlrealedfrkKyedKeDLaaQnqlkdlE ++ ++++ +++ rlq +++ lrea e+ ++K++ + lE mKIAA0674 461 dnlketdllrghvTRLQADLSELREASEQTQTKFKS-----EKQSRRQLE 505 ialntkeaeLaTaLeRqeaEndlvgLRaQiAklE.sla.aRkdlDeaTLa + +++E++l +LRa lE+ l++ +k ++ mKIAA0674 506 LKV-------------TSLEEELTDLRAEKTSLEkNLSeRKKKSAQER-- 540 rvDLEnkvEsLqEElaFLKknHeEEvkeLqaqiqdtgqvnVEmDaarqqE +++E+ ++E+ +k H+EE+ L+ + + V++D a mKIAA0674 541 -----CQAEAEMDEI---RKSHQEELDRLRQLLKKA---RVSTDQAA--- 576 wklDLtkaLrEiRaQYEeiAeknrqeaEewYksKleeLqtaaarngealr Lt a +E+++Q E+++e+ ++ a +++ e+ + + + + l mKIAA0674 577 -AEQLTLAQAELQSQWEAKCEQLLASARDEHLQQYREVCAQRDAHQQKLA 625 saKeEitElRRqiQsLeiELqslksqnasLErqlaElEeryeaelaqyqa + E l qi + + ++k + LE++ + + +++a+ + mKIAA0674 626 LLQDECLALQAQIAAFT----EQKEHMQRLEKTKSQAPA--GRAAADPSE 669 lisqlEeeL.qqlreEMarqLrEYQeLLdVKlaLDiEIATYRKLLEGEEs + + +++ q lr+E + EEs mKIAA0674 670 KVKKIMNQVfQSLRGEFEL----------------------------EES 691 R<-* mKIAA0674 692 Y 692 //