hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid24027/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0671  ( 198 res)   mid24027

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SOCS     suppressors of cytokine signalling              80.0    2.9e-19   1
SH2      Src homology 2 domains                          75.2    7.8e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH2        1/1      41   127 ..     1    87 []    75.2  7.8e-18
SOCS       1/1     137   180 ..     1    46 []    80.0  2.9e-19

Alignments of top-scoring domains:
SH2: domain 1 of 1, from 41 to 127: score 75.2, E = 7.8e-18
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg
                       p+Y+G ++R eAE+lL +  +p+GtFL+RdS ++ + +++S+r  +
   mKIAA0671    41    NPCYWGVMDRYEAEALLEG--KPEGTFLLRDSAQEDYLFSVSFRRYN 85   

                   kvkHyrIrrtddgkfylggtprrkFps..L.eLvehYqknslg<-*
                   +  H rI++ +   f+++ +++  F+s++++ L+ehY+ +s     
   mKIAA0671    86 RSLHARIEQWN-HNFSFDAHDPCVFHSstVtGLLEHYKDPSSC    127  

SOCS: domain 1 of 1, from 137 to 180: score 80.0, E = 2.9e-19
                   *->ltrpsnvrSLQHLRLCRftIrrctttdeikkLPLPpklkdYLseyk<
                      ++++++++SLQ+  +CR++I+rctt+d i++LPLP++l+d+L+ey+ 
   mKIAA0671   137    SLNRTFPFSLQY--ICRAVICRCTTYDGIDGLPLPSMLQDFLKEYH  180  

                   -*
                     
   mKIAA0671     -    -    

//