hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid24027/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0671  ( 198 res)   mid24027

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SOCS_box SOCS box                                        62.7    7.7e-15   1
SH2      SH2 domain                                      17.3    0.00099   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH2        1/1      44   121 ..     1    82 []    17.3  0.00099
SOCS_box   1/1     143   180 ..     1    42 []    62.7  7.7e-15

Alignments of top-scoring domains:
SH2: domain 1 of 1, from 44 to 121: score 17.3, E = 0.00099
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                       y+G + R eAE lL    +++GtFL+R+S  +   +++S+r+ +  
   mKIAA0671    44    -YWGVMDRYEAEALLEG--KPEGTFLLRDSAQEDYLFSVSFRRYN-- 85   

                   gdrVkHyrIqsldnggyyitggvk..F..ssLpeLvehY<-*
                     r  H rI + +   +     +   F++s++  L ehY   
   mKIAA0671    86 --RSLHARIEQWNHN-FSFDAHDPcvFhsSTVTGLLEHY    121  

SOCS_box: domain 1 of 1, from 143 to 180: score 62.7, E = 7.7e-15
                   *->prSLqhLCRlaIRrslgrdrlhlaikqLPLPprLkdYLleye<-*
                      p SLq+ CR +I+r++++d+    i+ LPLP++L+d+L+ey+   
   mKIAA0671   143    PFSLQYICRAVICRCTTYDG----IDGLPLPSMLQDFLKEYH    180  

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