hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02512/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0670  ( 1266 res)   mbh02512

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAP      SAP domain                                      45.6    1.1e-09   1
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     -5.4       0.88   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAP        1/1      12    46 ..     1    35 []    45.6  1.1e-09
RRM_1      1/1     941  1008 ..     1    74 []    -5.4     0.88

Alignments of top-scoring domains:
SAP: domain 1 of 1, from 12 to 46: score 45.6, E = 1.1e-09
                   *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-*
                      l++L+V++LK+ L++rGL++sG K+ Lv+RL+ al   
   mKIAA0670    12    LQALRVTDLKAALEQRGLAKSGQKSALVKRLKGAL    46   

RRM_1: domain 1 of 1, from 941 to 1008: score -5.4, E = 0.88
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      + ++NL +  t  +Lk+l +  G  ++    +D      + k ++FV
   mKIAA0670   941    VHISNLVRPFTLGQLKELLGRTGTLVEEAFWID------KIKSHCFV 981  

                   eFedeedAekAldalnGkelggrelrv<-*
                   ++ + e+A +   al+G +  + + +    
   mKIAA0670   982 TYSTVEEAVATRTALHGVKWPQSNPKF    1008 

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