hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21234/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0666  ( 1087 res)   mbg21234

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FH2      Formin Homology 2 Domain                       379.7   1.8e-109   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FH2        1/1     610  1070 ..     1   499 []   379.7 1.8e-109

Alignments of top-scoring domains:
FH2: domain 1 of 1, from 610 to 1070: score 379.7, E = 1.8e-109
                   *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseisegtvWettvnd
                      +k+ p+p++ LK+++W+kl            P ++ +gtvW     +
   mKIAA0666   610    KKNIPQPTNALKSFNWSKL------------PENKLDGTVW-----T 639  

                   kldeekfLynnldldeleelF.aak........ektkkakkrsvsekksk
                   ++d++k+  + ldl++le++F+a++++++   +  ++k+ + +++++ s 
   mKIAA0666   640 EIDDTKV-FKILDLEDLERTFsAYQrqqeffvnNSKQKEAD-AIDDTLS- 686  

                   lkkkkvqqnlkilDpkrsqnpplaIllrslhcklsfeetvikeailevDe
                     k kv++ l+++D++r+qn  ++Ill+ l  kls  e  ik ail++De
   mKIAA0666   687 -SKLKVKE-LSVIDGRRAQN--CNILLSRL--KLSNDE--IKRAILTMDE 728  

                   .dvlsvdlleqLlkfaPYsktkeelkklreykeddekspeeLaraeqiFl
                   +++l++d+leqLlkf P   +k+  ++l+e+k +    ++ +a a++ Fl
   mKIAA0666   729 qEDLPKDMLEQLLKFVP---EKSDIDLLEEHKHE----LDRMAKADR-FL 770  

                   llisnLipyleeRlnallfkanFeeevedLkpklekveaAceeLreSkkF
                   +++s+ i ++++Rl++l fk  F+e v++ kpk e++  ++ee+ +S+ +
   mKIAA0666   771 FEMSR-INHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSRAL 819  

                   rklLeliLaiGNyMNagsrrr.rGqAqGFkLssLlkLsdvKsadnk.tTL
                   ++lLe++La+GNyMN    +++rG+A+GFk+ssL+k++d+Ks+  k+ TL
   mKIAA0666   820 KQLLEVVLAFGNYMN----KGqRGNAYGFKISSLNKIADTKSSIDKnITL 865  

                   LHflvkiirkkypdllkFysdlhhvdkaskvnleqlekdvkqlerqiknl
                   LH+l+ i+++kyp++l++ ++l  +  a+kvn+ +l+k+   l+  +k++
   mKIAA0666   866 LHYLITIVENKYPKVLNLSEELRDIPQAAKVNMTELDKEISTLRSGLKAV 915  

                   E..ldkggLsdpeghpddkflevmtpFlkaAkekyekLqkdlrdlktrfe
                   E++l+ ++ + p  +p dkf+ v++ F+  A+  + ++++ l + k++f 
   mKIAA0666   916 EteLEYQKSQPP--QPGDKFVSVVSQFITLASFSFSDVEDLLAEAKELFT 963  

                   klveyygedpkdrdvspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEe
                   k+v+ +ge   +   +p+eFF+ f++Fl++  +a++en   E+ rk++Ee
   mKIAA0666   964 KAVKHFGEEAGK--IQPDEFFGIFDQFLQAVAEAKQEN---ENMRKRKEE 1008 

                   eerrakqlalrvketteyeqssskqkene.errvernplmdfeverdflg
                   eerra+ +a   ke+ e+e+++ k+ke ++e    +  + d+++++    
   mKIAA0666  1009 EERRARLEA-QLKEQRERERKVRKAKESSeE----SGEFDDLVSALRSGE 1053 

                   vldsllkelrtdssfer<-*
                   v+d+ l++l++++ + +   
   mKIAA0666  1054 VFDKDLSKLKRNRKRIS    1070 

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