hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg21234/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0666 ( 1087 res) mbg21234 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FH2 Formin Homology 2 Domain 519.8 1.9e-152 1 Drf_GBD Diaphanous GTPase-binding Domain 298.3 9.7e-86 1 Drf_FH3 Diaphanous FH3 Domain 248.6 8.8e-71 1 Filament Intermediate filament protein -192.1 0.8 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Drf_GBD 1/1 55 243 .. 1 322 [] 298.3 9.7e-86 Drf_FH3 1/1 245 451 .. 1 234 [] 248.6 8.8e-71 Filament 1/1 488 921 .. 1 359 [] -192.1 0.8 FH2 1/1 611 993 .. 1 413 [] 519.8 1.9e-152 Alignments of top-scoring domains: Drf_GBD: domain 1 of 1, from 55 to 243: score 298.3, E = 9.7e-86 *->lqmpsdeeLVdelFeellkedriflnLpedKreaLrnlsaekKWeli l+mp++eeL d++F+el+ ++ l+L++++rea+++l+aekKW+++ mKIAA0666 55 LPMPPVEEL-DVMFSELV-DE---LDLTDKHREAMFALPAEKKWQIY 96 cqylskndkgkkkksskselnekaiaSdileilteesspqeYiekLrsga c+++++++++k+++s +p++Yi++L+s+a mKIAA0666 97 CSKKKDQEENKGATS----------------------WPEFYIDQLNSMA 124 lsekllscsssskehsaknkslgslSpstkvvddgLkvaelesLrVaLrt ++++ll+ +++++e+++k+ +esL++aLrt mKIAA0666 125 ARKSLLALEKEEEEERSKT---------------------IESLKTALRT 153 npvsWVkaFgklgNkGliaLlkiLqtllkkkiyelestdsvesgvekskk +p+++V++F++l+ Gl ++l++L+t++++++++ mKIAA0666 154 KPMRFVTRFIDLD--GLSCILNFLKTMDYETSES---------------- 185 dspssedlskasprpsPqqnssqesksqqtlkllsqlsaqaqqlqkqqlq mKIAA0666 - -------------------------------------------------- - qsttliektlpsidkklqfecirClKaLMNnklGlkrvLsheesividtl ++++++i+C+KaLMNn++G+++vL+h+es i+++ mKIAA0666 186 ---------------RIHTSLIGCIKALMNNSQGRAHVLAHSES--INVI 218 vlsLdssnlktrklaleLLaalClv<-* ++sL ++n+kt+ ++le+L+a+Clv mKIAA0666 219 AQSLSTENIKTKVAVLEILGAVCLV 243 Drf_FH3: domain 1 of 1, from 245 to 451: score 248.6, E = 8.8e-71 *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva gGh++vl+a++++++ +er+RF+tl+++ld s+g++++ + +k+a mKIAA0666 245 GGHKKVLQAMLHYQKYASERTRFQTLINDLDK-STGRYRDEVSLKTA 290 tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL +m+FINa+ +g+++e+l+fRlhLR+Ef++lG++ +++kl+++ e+ +L mKIAA0666 291 IMSFINAVLSQGAGVESLDFRLHLRYEFLMLGIQPVIDKLREH--ENSTL 338 ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv d ++++Fe+ r+ ed+ e++ r+e ++ + mKIAA0666 339 DRHLDFFEML----RN------------EDELEFAKRFELVH-------I 365 eldslssvaellsnllkltgaedlllSilQhllllakdseeskLtsyikl + +s+++++el +++l++++a+++++Sil+h+l ++++++++ ++y+ l mKIAA0666 366 DTKSATQMFELTRRRLTHSEAYPHFMSILHHCLQMPYKRSGNT-VQYWLL 414 leeivqqIllhrtkpsdpkfeqklqenvdegterlld<-* l++i+qqI+ + k+ dp++ +++n+++ + +l+ mKIAA0666 415 LDRIIQQIVIQNDKGQDPDSTPLENFNIKNVVRMLVN 451 Filament: domain 1 of 1, from 488 to 921: score -192.1, E = 0.8 *->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa +EKe+m++ L++ + +Le + +e++q++ mKIAA0666 488 QEKEEMMQ-------------TLNKMKEKLEKETTEHKQVK------ 515 svsrlyslYeteieeLRrqidqltner....................... +++ +l +++ eL r ++++ +++++ ++++ ++++ ++ +++ mKIAA0666 516 --QQVADL-TAQLHELNRRAVCAAVPGgpspgapggpfpssglgsllppp 562 .................................................. +++ +++ ++++++ +++++++++++++ ++ ++++ + + + ++++ mKIAA0666 563 pppllsggalpppppplppggpppppgppplggvlpppgapvsltlkkkn 612 ........................................arlqlEidnl +++++ ++ + ++ ++++ +++ ++ ++++ + + +l+ + mKIAA0666 613 ipqptnalksfnwsklpenkldgtvwteiddtkvfkildlEDLERTFSAY 662 realedfrkKyedKe.D.....LaaQnqlkdlEialntkeaeLaTaLeRq + e f + ++Ke D +++L+ ++k+l + +R+ mKIAA0666 663 QRQQEFFVNNSKQKEaDaiddtLSSKLKVKELSVID-----------GRR 701 eaEndlvgLRaQiAklEslaaRkdlDeaTLarvDLEnkvEsLqEElaFLK + + ++ R l + + r L + E + K mKIAA0666 702 AQNCNILLS------------RLKLSNDEIKRAIL-----TMDEQEDLPK 734 knHeEEvkeLqaqiqdtgqvnVEmDaarqqEwklD.Ltka...LrEiRaQ ++ e+ +k + + + +E +lD+++ka++ L E+ mKIAA0666 735 DMLEQLLKFVPEKSDID---LLEEHKH-----ELDrMAKAdrfLFEM--- 773 YEeiAeknrqeaEewY.ksKleeLqtaaarngealrsaKeEitElRRqiQ + +++++q + + Y k K++e +++ ea+rs eE+ R Q mKIAA0666 774 --SRINHYQQRLQSLYfKKKFAERVAEVKPKVEAIRSGSEEVFRSRALKQ 821 sLeiELq...........slksqnasLErqlaElEeryeaelaqyqalis Le L+ ++ +++++++ + + s +++a+++ + li+ mKIAA0666 822 LLEVVLAfgnymnkgqrgNAYGFKISSLNKIADTKSSIDKNITLLHYLIT 871 qlEe...eLqqlreEMarqLrEYQeLLdVKlaLDiEIATYRKLL...EGE +E++ + + +l eE+ + + + + LD EI T R L+ E E mKIAA0666 872 IVENkypKVLNLSEELRDIPQAAKVNM---TELDKEISTLRSGLkavETE 918 EsR<-* + mKIAA0666 919 LEY 921 FH2: domain 1 of 1, from 611 to 993: score 519.8, E = 1.9e-152 *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse k+ p+p++ LK+++W+Kl++++ gt vW+++d+++ +k ldl++ mKIAA0666 611 KNIPQPTNALKSFNWSKLPENKLDGT-VWTEIDDTKVFK--ILDLED 654 lEelFsakakkkkekks............seksskskkkkkeisvLDpkr lE+ Fsa+ +++++ +++++++ + ++++ +sk k+ke+sv+D++r mKIAA0666 655 LERTFSAY---QRQQEFfvnnskqkeadaIDDTLSSKLKVKELSVIDGRR 701 sQNiaIlLrklsklppeeivqAilemDe.dvLgvvlflkemldllenLlk +QN++IlL++l kl+++ei++Ail mDe++ L+ +d+le+Llk mKIAA0666 702 AQNCNILLSRL-KLSNDEIKRAILTMDEqEDLP--------KDMLEQLLK 742 maPtkeElkklqekeykgdekspskLgraEqqFLlelskliprleeRlra ++P+k ++++l e+k++ ++++++a+ +FL+e+s+ i ++++Rl++ mKIAA0666 743 FVPEKSDIDLL--EEHKHE---LDRMAKAD-RFLFEMSR-INHYQQRLQS 785 llFkstFeeeveelkpsletleaAseeLreSrkfkklLeliLalGNyMNs l+Fk+ F+e+v+e+kp++e+++ +see+ +Sr +k+lLe++La+GNyMN+ mKIAA0666 786 LYFKKKFAERVAEVKPKVEAIRSGSEEVFRSRALKQLLEVVLAFGNYMNK 835 GtrrrGnAkGFkLssLlKLsdvKstidnktTLLHflvkeieesEGkrlEe G+r GnA+GFk+ssL+K++d+Ks+id+++TLLH+l +++e+ mKIAA0666 836 GQR--GNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVEN-------- 875 yrKLklpelldfsseLshVekAakvdleeLeadvkeLekglkklekelel k+p +l++s+eL ++++Aakv++ eL ++++ L+ glk++e+ele+ mKIAA0666 876 ----KYPKVLNLSEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEY 921 seeSkvsdeepsdkFvevmkeFleeAeekldkLesllkeakelfkelteY +++ ++++p+dkFv+v+++F+ A++++ +e+ll eakelf +++++ mKIAA0666 922 QKS---QPPQPGDKFVSVVSQFITLASFSFSDVEDLLAEAKELFTKAVKH 968 FghggedpkdetspeeFFkilrdFlnefk<-* F ge + + +p+eFF+i+++Fl+++ mKIAA0666 969 F---GEEAG-KIQPDEFFGIFDQFLQAVA 993 //