hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mth/mth02305/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0662  ( 1038 res)   mth02305

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                     78.4    1.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjC       1/1     178   278 ..     1   126 []    78.4  1.5e-19

Alignments of top-scoring domains:
JmjC: domain 1 of 1, from 178 to 278: score 78.4, E = 1.5e-19
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      ++ i+++ S+t++Hi++ g + ++y+++ ++k   +++  ++ +++ 
   mKIAA0662   178    YCLICVKDSYTDFHIDSGGAS-AWYHVLKGEK---IFYLIRPASAN- 219  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     + l++++       ++ ++h+ +++++++++++           +++ 
   mKIAA0662   220 --ISLYERW-------RSASNHSEMFFADQVDRCY-----------KCTV 249  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   k+G+++f+++g++++ ++  +++a+a +F   
   mKIAA0662   250 KQGQTLFIPSGWIYATLTPVDCLAFAGHF    278  

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