hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03031/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0661  ( 1035 res)   mpm03031

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RING     Ring finger                                     29.5    0.00047   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1     982  1020 ..     1    23 []    29.5  0.00047

Alignments of top-scoring domains:
RING: domain 1 of 1, from 982 to 1020: score 29.5, E = 0.00047
                   *->CpICle....pvvlpCgH.FCr.Ci..........CPlC<-*
                      Cp C  +++++v+++C H FC++C++++ + ++++CP C   
   mKIAA0661   982    CPCCNTrkkdAVLTKCFHvFCFeCVrgryearqrkCPKC    1020 

//