hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03031/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0661  ( 1035 res)   mpm03031

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
zf-C3HC4      Zinc finger, C3HC4 type (RING finger)      26.1     0.0008   1
Myosin_tail_1 Myosin tail                              -528.0       0.58   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Myosin_tail_1   1/1     176   951 ..     1   863 []  -528.0     0.58
zf-C3HC4        1/1     982  1020 ..     1    50 []    26.1   0.0008

Alignments of top-scoring domains:
Myosin_tail_1: domain 1 of 1, from 176 to 951: score -528.0, E = 0.58
                   *->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR
                       ++  ++ l  q +   se           +a v  L+   +  e  
   mKIAA0661   176    GTSDLREPLPVQFRAPLSE---------PALAFVVALG--ASSCEEV 211  

                   IeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEln
                      L+   E  +aA +++  +   L+r++EeL +R   + G ++a  E+ 
   mKIAA0661   212 ELQLQGRMEFSKAAVSRVVEASDRLQRQVEELCQRVY-SRGDSEAPGEVA 260  

                   kKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKqK
                   + R  EL +     E+ +lq  +  + L  KH  +  E+s+    Lq + 
   mKIAA0661   261 RVRTRELGR-----ENRRLQ--DLATQLQEKHHRISLEYSE----LQDKV 299  

                   akaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakqlEsqls.......
                   ++ E    ++++ v+dl+  ++ + K  +   K++  + +ql+++   ++
   mKIAA0661   300 TSTETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNsgyyvsg 349  

                   .ElqvKldElqRqlnDltsqKsRLqsENsdLtr....qleEaEaqvsqls
                   +        ++ +++ +    + L  EN +L++++  +le + a ++ ++
   mKIAA0661   350 sSTGFQGGQITLSMQKFEMLNAELE-ENQELANsrmaELEKLQAELQGAV 398  

                   klKsqlesQLEeAkRslEEEsReRanLqaqlrnlehDlDslrEqlEEE..
                   +++  l   L  + + +  E+ e   Lqaq+  l  +  ++++ql+E+++
   mKIAA0661   399 RTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEArg 448  

                   ..sEAKaeleRqLsKanaeiqqwrsKfEsEgalraEElEElKkKlnqkis
                      ++K+   R      ++   +++K+ +E+++                 
   mKIAA0661   449 llLASKNSHLRHIEHMESDELGLQKKLRTEVIQ----------------- 481  

                   ElEeaaEaanaKcssLEKtKsRLqsElEDlqievEranaaaseLEKKqkn
                    lE+++  ++               E E l+ie E   aa+ +     + 
   mKIAA0661   482 -LEDTLAQVR--------------KEYEMLRIEFEQNLAANEQAGPINRE 516  

                   FDKilaEwKkkvdelqaEletAqreaRnlstElfrlKneleElkDqvEaL
                      +++ +++   +l        r +R++ +E+ +l+++ + +   + +L
   mKIAA0661   517 MRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSSHCIPTL 566  

                   rRENKnLqdEikDLtdqLgEgGRnvHELEKarRrLEaEkdELqaALeEAE
                           + +   ++  g g   + +  K+ + L+   + +++ ++  E
   mKIAA0661   567 SHPDDPGLNALAPGKEDSGPGPGGTPDCKKEMALLAGATS-ATSSIKKEE 615  

                   aALeqeEsKvlRaqvElsqiRsEiERRLaEKEEEfEntRKnhqraiesL.
                     L + E+ ++++    + + s      + +E E+  +R  + r+  sL+
   mKIAA0661   616 --LVSSEDDAQALTPVTQGLPS------RGREPEARPKRELREREGPSLg 657  

                   ....qasLaEaEaKgKaEalRlKKKLEgdInELEiaLDhaNkanaeaqK.
                   +++   +L      ++a+  R K            +++ a +   e+ K+
   mKIAA0661   658 pppaASTL------SRAD--REK-----------AKVEEAKRKESELLKg 688  

                   ...nvKkyqqqvkeLQtqvEeeQRaredare..qlavaERRataLqaElE
                    + ++Kk+q+  ke+ + +++ + a  + r++ ql +aER+a+a   E++
   mKIAA0661   689 lraELKKAQESQKEMKLLLDMYKSAPKEQRDkvQLMAAERKAKA---EVD 735  

                   ELrvaL.eqaeRaRKqAEtElaE.aservneLtaqnssLiaqKRKLEg..
                   ELr+ ++e  eR R+ +   ++E+a  r+     q + L    RKL +++
   mKIAA0661   736 ELRSRIrELEERDRRESKKIADEdALRRIRQAEEQIEHL---QRKLGAtk 782  

                   .elaalqsDLDEavnElkaAeERakKAqaDa........arLaeELrqEQ
                   +e  al s++D + ++ +  +E   ++ ++++++++ + + + e +++ Q
   mKIAA0661   783 qEEEALLSEMDVTGQAFEDMQEQNGRLLQQLrekddanfKLMSERIKANQ 832  

                   ehsqklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIqKLEaRVReLE
                    h    E  +  L +qv  L+ + d    a+l      +qKLE + R L+
   mKIAA0661   833 IHKLLREE-KDELGEQVLGLKSQVD----AQLLT----VQKLEEKERALQ 873  

                   aELdgEqRRhaetqKnlRKaeRrvKELqfQvEEDkKnlerlQDLvDKLqa
                     L g +++      +l    R+  E  + +E+ k +le  Q        
   mKIAA0661   874 GSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQ-------- 915  

                   KiKtyKRQlEEaEEiaqinlsKyRkaQreLEdAEERADqAEsslnklRqr
                                       +++R +Q  L  AE RA     s+n+ R  
   mKIAA0661   916 --------------------TRLREIQPCL--AESRAAREKESFNLKRAQ 943  

                   e..aKsRr<-*
                   e+ +  Rr   
   mKIAA0661   944 EdiSRLRR    951  

zf-C3HC4: domain 1 of 1, from 982 to 1020: score 26.1, E = 0.0008
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+ C    k+++     ++ C H      fC++C++  ++  ++++C
   mKIAA0661   982    CPCCNTRKKDAV-----LTKCFHV-----FCFECVRGRYE-ARQRKC 1017 

                   plC<-*
                   p C   
   mKIAA0661  1018 PKC    1020 

//