hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj09075/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0658  ( 584 res)   mfj09075

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
FAD_binding_7  FAD binding domain of DNA photolyase     487.7   8.9e-143   1
DNA_photolyase DNA photolyase                           237.8    1.5e-67   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
DNA_photolyase   1/1      13   188 ..     1   185 []   237.8  1.5e-67
FAD_binding_7    1/1     221   498 ..     1   289 []   487.7 8.9e-143

Alignments of top-scoring domains:
DNA_photolyase: domain 1 of 1, from 13 to 188: score 237.8, E = 1.5e-67
                   *->stvvyWFrrDLRlhDNpALiyAaalAaaaagpnlipVFildpeefga
                      + +v+WFr++LRlhDNpAL++A+++A+      +++V+ildp+ +++
   mKIAA0658    13    ASSVHWFRKGLRLHDNPALLAAVRGARC-----VRCVYILDPWFAAS 54   

                   anpgpnrvaFllqsLedLdqsLraLgipLlvlrgdkrkdpaevlprlvke
                   + +g+nr++FllqsLedLd+sLr+L+++L+v rg+    pa+v+prl+ke
   mKIAA0658    55 SSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQ----PADVFPRLFKE 100  

                   wgatrvvfnfdyepyslrRdarVkkaLpeagpvavvqvddhtlvpPwevs
                   wg+tr++f++d ep++++Rda++ k ++eag v+vv+ ++htl+++++++
   mKIAA0658   101 WGVTRLTFEYDSEPFGKERDAAIMKMAKEAG-VEVVTENSHTLYDLDRII 149  

                   dknGypY.lvyTpFlkiwskclpeplppfppvpepkklp<-*
                   + nG++++l+y  F+   s+++  + p ++  +  +  +   
   mKIAA0658   150 ELNGQKPpLTYKRFQALISRMELPKKPAVAVSSQQMESC    188  

FAD_binding_7: domain 1 of 1, from 221 to 498: score 487.7, E = 8.9e-143
                   *->ppgetaalkrLeeFlaeraWlaeYeknRndPnaaLkdaTSrLSPyLh
                       +get+al+rL+++l+++aW+a+Ye++R++ n+ L++++++LSPyL+
   mKIAA0658   221    QGGETEALARLDKHLERKAWVANYERPRMNANS-LLASPTGLSPYLR 266  

                   FGqiSaRrvvlraraaqklskkdgeapgfeStdgvfleqlaWREfyrnfc
                   FG++S+R++++r+ +++k++k ++++p +      + +ql+WREf+++++
   mKIAA0658   267 FGCLSCRLFYYRLWDLYKKVKRNSTPPLS------LFGQLLWREFFYTAA 310  

                   fnnPnydsekglrsilkqipWaenplafhAWrqGrTGYPlvDAaMRqLla
                   +nnP++d+++g++ i+ qipW+ np+a+++W +G+TG+P++DA+M qL++
   mKIAA0658   311 TNNPRFDRMEGNP-ICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQ 359  

                   tGWmHnRlRmivaSFLtKdLLld.WRwGekyFmhgLlDgDwAkniggWqw
                   +GW+H+++R++va+FLt+++L+ +W+ G ++F ++LlD+D++ n+g W+w
   mKIAA0658   360 EGWIHHLARHAVACFLTRGDLWVsWESGVRVFDELLLDADFSVNAGSWMW 409  

                   ssssalDaqpyfRvlNPvyqgkkfDPnGeYirrWlPELrgvpdkdllaIH
                   +s+sa+++q+ f++++Pv +g+++DP G+Yirr+lP L+g+p +   +I+
   mKIAA0658   410 LSCSAFFQQF-FHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSR---YIY 455  

                   ePWkerasvqraagvelgfgYPrPiVdhgcaRkrnvaaykray<-*
                   ePW++++svq+aa++++g++YPrPiV+h++ ++ n++++k+ y   
   mKIAA0658   456 EPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIY    498  

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