hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg05167/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0657 ( 782 res) mbg05167 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- IG Immunoglobulin 226.1 3e-63 7 IGc2 Immunoglobulin C-2 Type 135.2 7.1e-36 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGc2 1/6 65 131 .. 1 56 [] 37.0 2.5e-06 IG 1/7 59 138 .. 1 58 [] 32.1 7.6e-05 IGc2 2/6 156 222 .. 1 56 [] 25.5 0.0075 IG 2/7 150 229 .. 1 58 [] 34.5 1.5e-05 IGc2 3/6 248 314 .. 1 56 [] 28.5 0.00091 IG 3/7 242 321 .. 1 58 [] 28.8 0.00077 IGc2 4/6 340 406 .. 1 56 [] 30.6 0.00021 IG 4/7 334 417 .. 1 58 [] 40.0 3.1e-07 IGc2 5/6 436 502 .. 1 56 [] 20.5 0.04 IG 5/7 430 509 .. 1 58 [] 26.8 0.003 IG 6/7 611 690 .. 1 58 [] 28.2 0.0011 IGc2 6/6 707 773 .. 1 56 [] 0.2 5.3 IG 7/7 701 780 .. 1 58 [] 45.2 8.5e-09 Alignments of top-scoring domains: IGc2: domain 1 of 6, from 65 to 131: score 37.0, E = 2.5e-06 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + V+LtC+ +p ++++W+k+g+++ +++ +++++ +L mKIAA0657 65 VRLERVVLTCE-LCRPWAEVRWTKdGEEVVespalllekedTIRRLV 110 iknvsleDsGlYtCvArNsvg<-* + +v+leDsG+Y C+ + mKIAA0657 111 LPSVQLEDSGEYLCEIHDESA 131 IG: domain 1 of 7, from 59 to 138: score 32.1, E = 7.6e-05 *->pp.vtvkeGesvtLtC.as....titWy................... +v +++ e+v+LtC+ + +++W++++ ++ + ++ mKIAA0657 59 EVhVAAVRLERVVLTCeLCrpwaEVRWTkdgeevvespalllekedt 105 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++L++++v++eDs G+Y C+ + + s+ ++t+tV+ mKIAA0657 106 irrLVLpSVQLEDS---GEYLCEIH--DESA--SFTITVT 138 IGc2: domain 2 of 6, from 156 to 222: score 25.5, E = 0.0075 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + + V+LtC+ ++++ ++W+k+g ++++++ ++++ + +L mKIAA0657 156 VSLECVVLTCE-LSREDAPVRWYKdGLEVEesealvlqsdgPRRRLV 201 iknvsleDsGlYtCvArNsvg<-* + +++eD G+ +C A mKIAA0657 202 LPAAQPEDGGEFVCDAGDDSA 222 IG: domain 2 of 7, from 150 to 229: score 34.5, E = 1.5e-05 *->pp.vtvkeGesvtLtC.as....titWy................... ++ ++ e v+LtC+ s + ++Wy+++ + +++++ mKIAA0657 150 EVtLHAVSLECVVLTCeLSredaPVRWYkdgleveesealvlqsdgp 196 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* +++L+++ ++peD G+++C a ++s+ ++t+tV+ mKIAA0657 197 rrrLVLpAAQPEDG---GEFVCDAG--DDSA--FFTVTVT 229 IGc2: domain 3 of 6, from 248 to 314: score 28.5, E = 0.00091 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + V+L+C+++ + +++W+k+g +++ ++ + + ++ tLt mKIAA0657 248 GAPGHVELRCEVAPAGS-QVRWYKdGLEVEvsdalqlgaegPARTLT 293 iknvsleDsGlYtCvArNsvg<-* + ++++eD+G+Y+C+ r ++ mKIAA0657 294 LPHAQPEDAGEYVCETRDEAV 314 IG: domain 3 of 7, from 242 to 321: score 28.8, E = 0.00077 *->pp.vtvkeGesvtLtC.as....titWy................... + ++ + + v+L+C++++ +++++Wy+++ ++ + + ++ mKIAA0657 242 SLdLQFGAPGHVELRCeVApagsQVRWYkdglevevsdalqlgaegp 288 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++Lt+++++peD+ G+Y+C+ + + +++++ mKIAA0657 289 artLTLpHAQPEDA---GEYVCETR--DEAV--TFNVSLA 321 IGc2: domain 4 of 6, from 340 to 406: score 30.6, E = 0.00021 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +G++V+L C+ + +++ W ++g+p++++++ + + ++ + L mKIAA0657 340 VPGEPVVLSCE-LSRASAQVFWSHnGSPVQqgeglelraegPRRILC 385 iknvsleDsGlYtCvArNsvg<-* i+ + l++ G+YtC+ s g mKIAA0657 386 IQAADLAHTGVYTCQSGASPG 406 IG: domain 4 of 7, from 334 to 417: score 40.0, E = 3.1e-07 *->pp.vtvkeGesvtLtC.as....titWy................... p ++ v++Ge+v+L+C+ s + +++W++++++ +++ + + ++ mKIAA0657 334 PNpLCVVPGEPVVLSCeLSrasaQVFWShngspvqqgeglelraegp 380 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ L I+ + ++++ G+YtC+ + g s +++++V mKIAA0657 381 rriLCIqAADLAHT---GVYTCQSGasPGAPSL--SFNVQVA 417 IGc2: domain 5 of 6, from 436 to 502: score 20.5, E = 0.04 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +G++++L + +p+ ++W+k+g++l+++++ + ++ + ++ L+ mKIAA0657 436 TPGGDLELVVH-LSRPGTPVRWYKdGERLAsqgrvqleqagARQVLR 481 iknvsleDsGlYtCvArNsvg<-* ++ ++++D+G+Y C A mKIAA0657 482 VRGARRGDAGEYLCDAPQDSR 502 IG: domain 5 of 7, from 430 to 509: score 26.8, E = 0.003 *->pp.vtvkeGesvtLtC.as....titWy................... + +v +G++++L + s +++ ++Wy+++ + ++++ + + + mKIAA0657 430 QTsVRSTPGGDLELVVhLSrpgtPVRWYkdgerlasqgrvqleqaga 476 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++ L+++++++ D+ G+Y C a ++s + ++V+ mKIAA0657 477 rqvLRVrGARRGDA---GEYLCDAP--QDSR--IFIVSVE 509 [output cut off at A = 10 top alignments] //